Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | JKJ11_RS04680 | Genome accession | NZ_CP068024 |
| Coordinates | 937346..937639 (+) | Length | 97 a.a. |
| NCBI ID | WP_006075255.1 | Uniprot ID | - |
| Organism | Vibrio sp. SCSIO 43133 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 932346..942639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JKJ11_RS04670 (JKJ11_04670) | - | 934857..935129 (+) | 273 | WP_006075676.1 | HU family DNA-binding protein | - |
| JKJ11_RS04675 (JKJ11_04675) | ppiD | 935315..937174 (+) | 1860 | WP_124940764.1 | peptidylprolyl isomerase | - |
| JKJ11_RS04680 (JKJ11_04680) | comEA | 937346..937639 (+) | 294 | WP_006075255.1 | ComEA family DNA-binding protein | Machinery gene |
| JKJ11_RS04685 (JKJ11_04685) | rrtA | 937622..938185 (-) | 564 | WP_198557454.1 | rhombosortase | - |
| JKJ11_RS04690 (JKJ11_04690) | - | 938184..938804 (+) | 621 | WP_252039097.1 | DTW domain-containing protein | - |
| JKJ11_RS04695 (JKJ11_04695) | - | 938825..940156 (-) | 1332 | WP_006075258.1 | anti-phage deoxyguanosine triphosphatase | - |
| JKJ11_RS04700 (JKJ11_04700) | yfbR | 940175..940759 (-) | 585 | WP_006075259.1 | 5'-deoxynucleotidase | - |
| JKJ11_RS04705 (JKJ11_04705) | - | 940843..942057 (-) | 1215 | WP_006075260.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10746.36 Da Isoelectric Point: 5.1881
>NTDB_id=526329 JKJ11_RS04680 WP_006075255.1 937346..937639(+) (comEA) [Vibrio sp. SCSIO 43133]
MKYLKNVWLLLVLLVAPVSFSYASEAKKLEGIEITVNINQAGPEELAELLKGVGEEKAKDIVEYRDQHGSFKSADDLTQV
KGIGEATVEKNRSRITL
MKYLKNVWLLLVLLVAPVSFSYASEAKKLEGIEITVNINQAGPEELAELLKGVGEEKAKDIVEYRDQHGSFKSADDLTQV
KGIGEATVEKNRSRITL
Nucleotide
Download Length: 294 bp
>NTDB_id=526329 JKJ11_RS04680 WP_006075255.1 937346..937639(+) (comEA) [Vibrio sp. SCSIO 43133]
ATGAAGTATCTAAAAAACGTTTGGCTGCTACTAGTTTTGTTAGTTGCCCCAGTGAGCTTTTCCTATGCATCTGAAGCGAA
GAAACTAGAGGGGATAGAGATAACAGTCAATATCAACCAAGCGGGCCCTGAGGAACTAGCGGAACTGCTCAAAGGTGTTG
GCGAGGAAAAAGCAAAAGATATTGTGGAGTATCGCGATCAACACGGAAGTTTTAAATCGGCAGATGATTTAACTCAAGTG
AAAGGTATTGGTGAAGCAACGGTAGAGAAGAACCGTTCAAGAATCACTTTGTAA
ATGAAGTATCTAAAAAACGTTTGGCTGCTACTAGTTTTGTTAGTTGCCCCAGTGAGCTTTTCCTATGCATCTGAAGCGAA
GAAACTAGAGGGGATAGAGATAACAGTCAATATCAACCAAGCGGGCCCTGAGGAACTAGCGGAACTGCTCAAAGGTGTTG
GCGAGGAAAAAGCAAAAGATATTGTGGAGTATCGCGATCAACACGGAAGTTTTAAATCGGCAGATGATTTAACTCAAGTG
AAAGGTATTGGTGAAGCAACGGTAGAGAAGAACCGTTCAAGAATCACTTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59.783 |
94.845 |
0.567 |
| comEA | Vibrio campbellii strain DS40M4 |
59.14 |
95.876 |
0.567 |
| comEA | Vibrio cholerae C6706 |
61.333 |
77.32 |
0.474 |
| comEA | Vibrio cholerae strain A1552 |
61.333 |
77.32 |
0.474 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comE | Neisseria gonorrhoeae MS11 |
44.944 |
91.753 |
0.412 |
| comEA | Acinetobacter baylyi ADP1 |
47.619 |
86.598 |
0.412 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
42.045 |
90.722 |
0.381 |
| comEA | Acinetobacter baumannii strain A118 |
48.649 |
76.289 |
0.371 |