NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	JJN14_RS03390	Genome accession	NZ_CP067992
Coordinates	678879..679349 (+)	Length	156 a.a.
NCBI ID	WP_004269791.1	Uniprot ID	A0A387AY12
Organism	Streptococcus mitis strain S022-V7-A3
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 673879..684349

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJN14_RS03370 (JJN14_03370)	-	674084..676564 (+)	2481	WP_322107906.1	bifunctional DnaQ family exonuclease/ATP-dependent helicase	-
JJN14_RS03375 (JJN14_03375)	-	676569..677792 (+)	1224	WP_061590331.1	FtsW/RodA/SpoVE family cell cycle protein	-
JJN14_RS03380 (JJN14_03380)	-	677803..678357 (+)	555	WP_201058909.1	DJ-1 family glyoxalase III	-
JJN14_RS03385 (JJN14_03385)	rpsF	678577..678867 (+)	291	WP_001151778.1	30S ribosomal protein S6	-
JJN14_RS03390 (JJN14_03390)	ssbA	678879..679349 (+)	471	WP_004269791.1	single-stranded DNA-binding protein SsbA	Machinery gene
JJN14_RS03395 (JJN14_03395)	rpsR	679381..679620 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
JJN14_RS03400 (JJN14_03400)	-	679792..680295 (+)	504	WP_201058910.1	GNAT family N-acetyltransferase	-
JJN14_RS03405 (JJN14_03405)	-	680375..681775 (+)	1401	WP_201058911.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
JJN14_RS03410 (JJN14_03410)	-	681777..682139 (+)	363	WP_020902234.1	S1 RNA-binding domain-containing protein	-
JJN14_RS03415 (JJN14_03415)	-	682192..682941 (+)	750	WP_000390769.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
JJN14_RS03420 (JJN14_03420)	-	682931..683218 (+)	288	WP_033689123.1	GIY-YIG nuclease family protein	-
JJN14_RS03425 (JJN14_03425)	-	683301..684236 (+)	936	WP_201058912.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

Download Length: 156 a.a. Molecular weight: 17382.23 Da Isoelectric Point: 4.9164

                                >NTDB_id=526148 JJN14_RS03390 WP_004269791.1 678879..679349(+) (ssbA) [Streptococcus mitis strain S022-V7-A3]

MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGERETDFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR

SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide

Download Length: 471 bp

                                >NTDB_id=526148 JJN14_RS03390 WP_004269791.1 678879..679349(+) (ssbA) [Streptococcus mitis strain S022-V7-A3]

ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC

GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGACTGATTTTATCAATGTCGTTATGT

GGCGCCAACAGGCTGAAAACCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT

AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG

TGTGCGTGAGGGTCACACAGGTGGAGCTTATTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACCAGACT

TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCGTTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A387AY12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.651	100	0.603
ssb	Latilactobacillus sakei subsp. sakei 23K	52.841	100	0.596
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372
ssbB	Streptococcus sobrinus strain NIDR 6715-7	53.211	69.872	0.372

Detailed information NTG0526148