Detailed information NTG0525862

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JHW41_RS05600
• Genome accession: NZ_CP067396
• Coordinates: 1296157..1297425 (-)
• Length: 422 a.a.
• NCBI ID: WP_078998160.1
• Uniprot ID: -
• Organism: Lysobacter enzymogenes strain CX06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1291157..1302425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW41_RS05585 (JHW41_05555)	-	1293495..1294412 (+)	918	WP_250449288.1	Nudix family hydrolase	-
JHW41_RS05590 (JHW41_05560)	coaE	1294631..1295245 (-)	615	WP_250449289.1	dephospho-CoA kinase	-
JHW41_RS05595 (JHW41_05565)	-	1295250..1296137 (-)	888	WP_057948799.1	A24 family peptidase	-
JHW41_RS05600 (JHW41_05570)	pilC	1296157..1297425 (-)	1269	WP_078998160.1	type II secretion system F family protein	Machinery gene
JHW41_RS05605 (JHW41_05575)	pilB	1297429..1299156 (-)	1728	WP_250449290.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHW41_RS05610 (JHW41_05580)	-	1299234..1300940 (-)	1707	WP_250449291.1	phosphoethanolamine transferase	-
JHW41_RS05615 (JHW41_05585)	-	1300999..1301439 (-)	441	WP_284499531.1	pilin	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 45992.46 Da
• Isoelectric Point: 10.3218

>NTDB_id=525862 JHW41_RS05600 WP_078998160.1 1296157..1297425(-) (pilC) [Lysobacter enzymogenes strain CX06]
MSATRSATRAASKTAPQVRRENPLALFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPTVVKPKAKPLFGASGKRI
TATDIAIFSRQIATMLKSGVPIVTSLEIIGEGHKNPRMKTLLNAVRSDLESGLSLYEAMSRHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALYYPATVIAVAILVSAILLVFVVPQFKATFQSFGADLPAFTLMVIGMSEFMIQ
WWWAVLLLVVGAGVAFVMAKNRSLAFSHFIDRMMLKLPIVGQILHNAAIARFARTLAVSFRAGVPLVEALDTVAGATGNV
VYEKAVLRIRDDVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVIAMYLPIFKLAATI

Nucleotide

• Length: 1269 bp

>NTDB_id=525862 JHW41_RS05600 WP_078998160.1 1296157..1297425(-) (pilC) [Lysobacter enzymogenes strain CX06]
ATGTCCGCGACCCGTTCCGCCACTCGCGCCGCCAGCAAGACCGCCCCCCAGGTCCGCCGCGAAAATCCCCTGGCCCTGTT
CGTCTGGCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCCAAGAACGCCAACCTGCTGCGCGCCG
AGCTGCGCCGCCAGGGCATCACCCCGACCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCCTCCGGCAAGCGCATC
ACCGCGACCGACATCGCCATCTTCAGCCGCCAGATCGCGACCATGCTGAAGTCCGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGACCCTGCTCAACGCCGTGCGCTCCGATCTGGAAAGCGGCTTGT
CGCTGTACGAGGCGATGTCCCGGCATCCGGTGCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCGGCG
GGCGTGCTCGAAACCGTGCTGGACACGGTCGCCACGTACAAGGAAAACATCGAAACCCTCAAGGGCAAGATCAAGAAAGC
CTTGTACTACCCGGCCACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGCAGTTCA
AGGCGACGTTCCAGAGCTTCGGCGCGGATCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGAATTCATGATCCAG
TGGTGGTGGGCCGTCCTGCTGCTGGTGGTCGGCGCCGGCGTCGCCTTCGTCATGGCCAAGAACCGCTCGCTGGCGTTCTC
CCACTTCATCGACCGGATGATGCTCAAGCTGCCGATCGTGGGCCAGATCCTGCACAACGCGGCCATCGCCCGCTTCGCCC
GCACCCTGGCCGTCAGCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGATACCGTCGCCGGCGCGACCGGCAACGTC
GTCTACGAGAAGGCCGTGCTGCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTGATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CGGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGACGCGCTGTCGAGCCTGCTCGAACCGCTGATCATGATCATCCTG
GGCGTCATCGTCGGCGGCATGGTCATCGCGATGTATCTGCCGATCTTCAAGCTGGCCGCCACGATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (292-414)

• Type II secretion system (T2SS), protein F (T2SSF) (88-211)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	55.693	95.735	0.533
pilC	Pseudomonas stutzeri DSM 10701	54.523	94.313	0.514
pilC	Acinetobacter baylyi ADP1	52.709	96.209	0.507
pilC	Acinetobacter baumannii D1279779	51.478	96.209	0.495
pilG	Neisseria gonorrhoeae MS11	43.25	94.787	0.41
pilG	Neisseria meningitidis 44/76-A	43.25	94.787	0.41
pilC	Vibrio campbellii strain DS40M4	41.667	96.682	0.403
pilC	Vibrio cholerae strain A1552	40.796	95.261	0.389
pilC	Thermus thermophilus HB27	36.085	100	0.363