Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JHW38_RS11255 Genome accession   NZ_CP067395
Coordinates   2711955..2713223 (+) Length   422 a.a.
NCBI ID   WP_207525989.1    Uniprot ID   -
Organism   Lysobacter enzymogenes strain CX03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2706955..2718223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW38_RS11235 (JHW38_11235) - 2707151..2707996 (-) 846 WP_207525985.1 GNAT family N-acetyltransferase -
  JHW38_RS11240 (JHW38_11240) - 2707989..2709137 (-) 1149 WP_207525986.1 glycosyltransferase -
  JHW38_RS11245 (JHW38_11245) - 2709226..2710089 (-) 864 WP_207525987.1 glycosyltransferase family 2 protein -
  JHW38_RS11250 (JHW38_11250) pilB 2710224..2711951 (+) 1728 WP_207525988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JHW38_RS11255 (JHW38_11255) pilC 2711955..2713223 (+) 1269 WP_207525989.1 type II secretion system F family protein Machinery gene
  JHW38_RS11260 (JHW38_11260) - 2713243..2714130 (+) 888 WP_207525990.1 A24 family peptidase -
  JHW38_RS11265 (JHW38_11265) coaE 2714130..2714744 (+) 615 WP_207525991.1 dephospho-CoA kinase -
  JHW38_RS11270 (JHW38_11270) - 2714951..2715922 (-) 972 WP_278249820.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46031.45 Da        Isoelectric Point: 10.3300

>NTDB_id=525852 JHW38_RS11255 WP_207525989.1 2711955..2713223(+) (pilC) [Lysobacter enzymogenes strain CX03]
MSASRSATRTATKTAPQVRRENPLEVFVWQGTDKRGIKMKGEQAAKNANLLRAELRRQGITPNVVKPKGKPLFGASGKRI
TPGDIAIFSRQIATMMKSGVPIVTSLEIIGEGHKNPRMKKLLNAIRADLESGLSLYEAMSKHPVQFDELYRNLVKAGESA
GVLETVLDTVATYKENIETLKGKIKKALFYPATVVAVAILVSAILLIFVVPQFQATFKSFGADLPAFTLMVIGMSDFMIQ
WWWAILFLVIGAAVAFIMAKNRSPAFAHFLDRVMLKIPVVGQILHNAAIARFARTLAVTFRAGVPLVEALDTVAGATGNV
VYEKAVNRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIIL
GVIVGGMVVAMYLPIFKLAATI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=525852 JHW38_RS11255 WP_207525989.1 2711955..2713223(+) (pilC) [Lysobacter enzymogenes strain CX03]
ATGTCCGCGTCCCGATCCGCCACTCGCACCGCCACCAAGACCGCCCCCCAGGTCCGCCGCGAAAATCCGCTGGAAGTCTT
CGTCTGGCAGGGCACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGGCGGCGAAGAACGCCAACCTGCTGCGCGCCG
AACTGCGCCGCCAGGGCATCACCCCGAACGTGGTCAAGCCCAAGGGCAAGCCGCTGTTCGGCGCCTCCGGCAAGCGCATC
ACCCCAGGCGACATCGCCATCTTCAGCCGCCAGATCGCCACGATGATGAAGTCCGGCGTGCCGATCGTGACCTCGCTGGA
GATCATCGGCGAGGGCCACAAGAACCCGCGCATGAAGAAGCTGCTCAACGCGATCCGCGCCGACCTGGAAAGCGGTCTGT
CGCTGTATGAGGCGATGAGCAAGCACCCGGTCCAGTTCGACGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAATCCGCC
GGCGTGCTCGAGACCGTGCTCGACACGGTCGCGACGTACAAGGAAAACATCGAAACCCTGAAGGGCAAGATCAAGAAGGC
GCTGTTCTACCCGGCCACGGTCGTCGCGGTCGCGATCCTGGTCAGCGCGATCCTGCTGATCTTCGTGGTGCCGCAGTTCC
AGGCCACGTTCAAGAGCTTCGGCGCCGACCTGCCGGCCTTCACCTTGATGGTGATCGGCATGAGCGACTTCATGATCCAG
TGGTGGTGGGCGATCCTGTTCCTGGTGATCGGCGCGGCGGTCGCCTTCATCATGGCCAAGAACCGCTCGCCGGCGTTCGC
CCATTTCCTCGATCGGGTCATGCTGAAGATCCCGGTCGTCGGCCAGATCCTGCACAACGCCGCGATCGCGCGCTTCGCCC
GCACCCTGGCGGTGACCTTCCGCGCCGGCGTGCCGCTGGTGGAAGCGCTCGACACCGTCGCCGGCGCGACCGGCAACGTG
GTCTACGAGAAGGCGGTCAACCGCATCCGCGACGACGTCTCGGTCGGCTACCAGGTCAACATGGCGATGAAGCAGGTCAA
CCTGTTCCCGCACATGGTCGTGCAGATGACCGCGATCGGCGAAGAAGCCGGCGCGCTCGACACCATGCTGGTCAAGGTCG
CCGAGTTCTACGAGCAGGAGGTCAACAACGCCGTCGATGCGCTGTCGAGCCTGCTGGAACCGCTGATCATGATCATCCTC
GGCGTCATCGTCGGCGGCATGGTGGTGGCGATGTATCTGCCGATCTTCAAGCTGGCGGCGACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

57.178

95.735

0.547
  pilC Pseudomonas stutzeri DSM 10701

56.927

94.076

0.536
  pilC Acinetobacter baylyi ADP1

52.956

96.209

0.509
  pilC Acinetobacter baumannii D1279779

51.478

96.209

0.495
  pilG Neisseria gonorrhoeae MS11

42.965

94.313

0.405
  pilG Neisseria meningitidis 44/76-A

42.965

94.313

0.405
  pilC Vibrio campbellii strain DS40M4

40.686

96.682

0.393
  pilC Vibrio cholerae strain A1552

40.75

94.787

0.386
  pilC Thermus thermophilus HB27

36.73

100

0.367