Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DESMER_RS22340 Genome accession   NC_018515
Coordinates   4844955..4845365 (-) Length   136 a.a.
NCBI ID   WP_014905337.1    Uniprot ID   A0A099SB86
Organism   Desulfosporosinus meridiei DSM 13257     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4839955..4850365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESMER_RS22315 (Desmer_4632) lonC 4840740..4842647 (-) 1908 WP_014905332.1 Lon family ATP-dependent protease -
  DESMER_RS22320 (Desmer_4633) rplI 4842701..4843147 (-) 447 WP_014905333.1 50S ribosomal protein L9 -
  DESMER_RS22325 (Desmer_4634) - 4843161..4844096 (-) 936 WP_014905334.1 DUF2232 domain-containing protein -
  DESMER_RS22330 (Desmer_4635) - 4844121..4844411 (-) 291 WP_014905335.1 MazG-like family protein -
  DESMER_RS22335 (Desmer_4636) rpsR 4844703..4844933 (-) 231 WP_014905336.1 30S ribosomal protein S18 -
  DESMER_RS22340 (Desmer_4637) ssbA 4844955..4845365 (-) 411 WP_014905337.1 single-stranded DNA-binding protein Machinery gene
  DESMER_RS22345 (Desmer_4638) rpsF 4845384..4845671 (-) 288 WP_014905338.1 30S ribosomal protein S6 -
  DESMER_RS22350 (Desmer_4639) ychF 4845867..4846967 (-) 1101 WP_014905339.1 redox-regulated ATPase YchF -
  DESMER_RS22355 (Desmer_4640) - 4847095..4847289 (-) 195 WP_014905340.1 DUF951 domain-containing protein -
  DESMER_RS22360 (Desmer_4641) - 4847486..4848355 (-) 870 WP_014905341.1 mechanosensitive ion channel family protein -
  DESMER_RS22365 (Desmer_4642) - 4848383..4849759 (-) 1377 WP_014905342.1 aminopeptidase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15063.85 Da        Isoelectric Point: 5.8920

>NTDB_id=52544 DESMER_RS22340 WP_014905337.1 4844955..4845365(-) (ssbA) [Desulfosporosinus meridiei DSM 13257]
MLNRVILIGRLTKDPELRYTPTGVAVANFTLAIDRNYKNSQGERDTDFINCVVYRQLAELCANYLAKGKLASVDGRIQVR
SYTGQDGQKRWVTEVIAEDVRFLSPKDSGGGSAESRSFGGNSSFGHEVNLDDDIPF

Nucleotide


Download         Length: 411 bp        

>NTDB_id=52544 DESMER_RS22340 WP_014905337.1 4844955..4845365(-) (ssbA) [Desulfosporosinus meridiei DSM 13257]
ATGTTAAATCGTGTCATCTTGATAGGCCGTTTGACGAAAGACCCCGAATTGCGATACACCCCAACAGGTGTAGCGGTTGC
AAATTTTACATTAGCAATTGATCGCAATTATAAGAATTCTCAAGGGGAAAGAGATACCGACTTTATTAATTGCGTAGTTT
ATCGGCAACTTGCTGAACTCTGTGCTAATTATTTAGCTAAGGGTAAACTGGCATCAGTTGATGGTCGAATTCAGGTGCGT
TCGTACACTGGACAAGATGGTCAAAAGCGCTGGGTAACAGAGGTTATTGCTGAAGATGTTCGTTTCCTAAGTCCAAAAGA
TAGTGGAGGCGGAAGCGCAGAATCGAGATCCTTTGGTGGGAATAGTTCCTTTGGACATGAAGTGAATTTGGATGATGACA
TCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099SB86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.147

100

0.551
  ssb Latilactobacillus sakei subsp. sakei 23K

44.615

95.588

0.426
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

77.941

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.706

100

0.397
  ssbA Streptococcus mutans UA159

37.41

100

0.382
  ssb Neisseria meningitidis MC58

39.844

94.118

0.375
  ssb Neisseria gonorrhoeae MS11

42.982

83.824

0.36

Multiple sequence alignment