Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JFY49_RS01630 Genome accession   NZ_CP067019
Coordinates   354311..355537 (-) Length   408 a.a.
NCBI ID   WP_086195206.1    Uniprot ID   A0A241VD28
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349311..360537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS01605 (JFY49_01605) - 350662..350985 (+) 324 WP_086195201.1 pyrimidine/purine nucleoside phosphorylase -
  JFY49_RS01610 (JFY49_01610) rlmB 351127..351876 (+) 750 WP_086195202.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JFY49_RS01615 (JFY49_01615) - 351908..352825 (+) 918 WP_086195203.1 DMT family transporter -
  JFY49_RS01620 (JFY49_01620) coaE 352845..353435 (-) 591 WP_086195204.1 dephospho-CoA kinase -
  JFY49_RS17615 (JFY49_01625) pilD 353451..354311 (-) 861 WP_086195205.1 prepilin peptidase Machinery gene
  JFY49_RS01630 (JFY49_01630) pilC 354311..355537 (-) 1227 WP_086195206.1 type II secretion system F family protein Machinery gene
  JFY49_RS01635 (JFY49_01635) pilB 355565..357277 (-) 1713 WP_086195207.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JFY49_RS01640 (JFY49_01640) tpiA 357558..358349 (+) 792 WP_086195208.1 triose-phosphate isomerase -
  JFY49_RS01645 (JFY49_01645) secG 358363..358692 (+) 330 WP_086195209.1 preprotein translocase subunit SecG -
  JFY49_RS01675 (JFY49_01675) rimP 359632..360156 (+) 525 WP_086195210.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44853.33 Da        Isoelectric Point: 9.8292

>NTDB_id=524460 JFY49_RS01630 WP_086195206.1 354311..355537(-) (pilC) [Acinetobacter sp. CS-2]
MAVKKAQMMPVFSYEGVDRKGEKLKGELPARNMALAKVTLRKQGITIKHIREKRKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPAAVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGAMIA
GFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNCVYEAAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=524460 JFY49_RS01630 WP_086195206.1 354311..355537(-) (pilC) [Acinetobacter sp. CS-2]
ATGGCTGTCAAAAAAGCACAGATGATGCCCGTCTTCAGTTATGAAGGTGTTGATCGTAAAGGGGAAAAACTTAAAGGGGA
ACTTCCTGCGCGGAATATGGCACTTGCTAAAGTGACTTTACGTAAGCAGGGGATCACCATTAAACATATTCGGGAAAAAC
GTAAAAATATTCTCGAAGGTTTAATGAAAAAGAAAGTGTCCACCTTGGATATCACGATTTTTACCCGCCAGCTGGCCACC
ATGATGAAAGCCGGTGTACCACTTGTGCAAAGCTTTGAAATTGTTGCGGAAGGCTTGGAAAACCCAGCGATGCGTGAAGT
AGTACTTGGTATTAAAGGTGAAGTTGAAGGCGGGAATACCTTTGCTGGTGCACTTAAAAAATATCCTCAATATTTTGATA
ATTTATTTTGCTCACTGGTCGAATCTGGCGAACAGTCAGGTGCGCTGGAAACCATGCTAGATCGTGTCGCGATCTATAAA
GAGAAAAGCGAACTTTTAAAGCAAAAAATCAAAAAAGCCATGAAATATCCGGCAGCTGTCATTGTAGTTGCCGTGATCGT
GACCATTATTTTGATGGTTAAAGTGGTACCTGTGTTCCAGGACCTCTTTAGTTCATTTGGTGCCGATTTACCTGCCTTTA
CCAAAATGGTGGTAAATATGTCGGAATGGATGCAAAAGTACTGGTTTATTCTGATTATTGCCATTGGTGCAATGATTGCC
GGATTTCTTGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTTCTGGATAAAGCAGCCCTCAAAGCGCCTATTTTTGG
TGACCTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGTACGTTAGCAACCACCTTTGCTGCTGGTGTTCCCTTGATTG
ATGCCTTGGAATCCACTGCAGGCGCAACTAACAATTGTGTTTATGAAGCAGCGGTGATGAAAATCCGTGATGATGTAGCC
ACAGGCCAACAGCTACAATTTGCCATGCGGGTTACCAACAAATTTCCATCCATGGCTGTACAGATGGTGGCGATTGGTGA
AGAATCGGGTGCCCTCGACAGTATGCTGGATAAAGTTGCCACCCACTTTGAAAATGAGGTCGACAATGCGGTCGATGGTT
TAACCTCCATGATGGAACCCCTCATTATGGCCGTGCTGGGTGTGCTGGTTGGTGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A241VD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.196

100

0.902
  pilC Acinetobacter baylyi ADP1

84.804

100

0.848
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.457

97.549

0.404