NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JFY49_RS17615	Genome accession	NZ_CP067019
Coordinates	353451..354311 (-)	Length	286 a.a.
NCBI ID	WP_086195205.1	Uniprot ID	A0A241VE76
Organism	Acinetobacter sp. CS-2
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 348451..359311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JFY49_RS01600 (JFY49_01600)	recN	348486..350147 (-)	1662	WP_086195200.1	DNA repair protein RecN	-
JFY49_RS01605 (JFY49_01605)	-	350662..350985 (+)	324	WP_086195201.1	pyrimidine/purine nucleoside phosphorylase	-
JFY49_RS01610 (JFY49_01610)	rlmB	351127..351876 (+)	750	WP_086195202.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
JFY49_RS01615 (JFY49_01615)	-	351908..352825 (+)	918	WP_086195203.1	DMT family transporter	-
JFY49_RS01620 (JFY49_01620)	coaE	352845..353435 (-)	591	WP_086195204.1	dephospho-CoA kinase	-
JFY49_RS17615 (JFY49_01625)	pilD	353451..354311 (-)	861	WP_086195205.1	prepilin peptidase	Machinery gene
JFY49_RS01630 (JFY49_01630)	pilC	354311..355537 (-)	1227	WP_086195206.1	type II secretion system F family protein	Machinery gene
JFY49_RS01635 (JFY49_01635)	pilB	355565..357277 (-)	1713	WP_086195207.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JFY49_RS01640 (JFY49_01640)	tpiA	357558..358349 (+)	792	WP_086195208.1	triose-phosphate isomerase	-
JFY49_RS01645 (JFY49_01645)	secG	358363..358692 (+)	330	WP_086195209.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32234.63 Da Isoelectric Point: 8.0518

                                >NTDB_id=524491 JFY49_RS17615 WP_086195205.1 353451..354311(-) (pilD) [Acinetobacter sp. CS-2]

MQDFISYFMINPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRQDCQILLHSEQVIIDETKITLSKPDSTCPKCQTP

IRWYQNIPVISWLFLRGKCGSCKNPISIRYPLIELLTAACSLIIVAVFGPTLQMLFGLILTWVLIALTFIDFDTQLLPDR

YTLTLAALGLGINSYSIYTSPTSAIWGYIIGFLCLWIVYYLFKMITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF

VGAVIGIILLKVRKENQPFAFGPYIAIAGWIAFIWGEQIMKIYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=524491 JFY49_RS17615 WP_086195205.1 353451..354311(-) (pilD) [Acinetobacter sp. CS-2]

ATGCAAGATTTCATTTCTTATTTTATGATCAACCCAACTGCTTTATATATTGCAGTTGGGCTTTTTAGTCTCTGTATCGG

CAGTTTTCTCAATGTCGTGATTTATCGAACGCCGAAAATGATGGAGCAAGAGTGGCGGCAGGATTGTCAAATATTGCTGC

ATTCTGAACAGGTCATTATTGACGAAACAAAAATCACCCTCAGCAAGCCAGATTCTACCTGTCCGAAATGCCAAACGCCC

ATTCGCTGGTATCAGAATATTCCTGTCATCAGCTGGCTGTTTTTACGGGGCAAATGCGGTTCTTGCAAAAATCCGATCAG

TATTCGCTATCCGCTCATTGAATTGTTAACTGCAGCATGTTCCCTGATTATTGTGGCAGTATTCGGCCCTACCCTGCAGA

TGCTGTTTGGCCTGATCCTCACCTGGGTACTGATCGCACTCACCTTTATTGATTTTGATACCCAGCTTCTCCCAGACCGC

TATACCTTAACTCTGGCCGCCTTAGGTTTGGGAATCAATAGCTATAGTATCTATACCAGTCCAACCTCTGCCATCTGGGG

CTATATTATTGGTTTCCTGTGTTTGTGGATTGTCTATTATCTGTTTAAGATGATTACAGGTAAAGAAGGTATGGGCTATG

GCGACTTTAAACTTCTGGCTGCCTTAGGTGCCTGGATGGGGCCATTGATGCTCCCATTGATCGTATTGCTTTCTTCTTTC

GTAGGTGCCGTGATTGGCATTATTCTGCTGAAAGTACGCAAAGAGAACCAGCCTTTTGCATTTGGTCCTTATATTGCCAT

TGCCGGATGGATTGCTTTTATTTGGGGTGAGCAGATTATGAAAATCTATTTAGGACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A241VE76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	81.754	99.65	0.815
pilD	Acinetobacter nosocomialis M2	81.404	99.65	0.811
pilD	Vibrio cholerae strain A1552	53.214	97.902	0.521
pilD	Vibrio campbellii strain DS40M4	52.482	98.601	0.517
pilD	Neisseria gonorrhoeae MS11	46.52	95.455	0.444

Detailed information NTG0524491