Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6H70_RS16985 Genome accession   NZ_CP067013
Coordinates   3645845..3647062 (+) Length   405 a.a.
NCBI ID   WP_200290949.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain FDAARGOS_1013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3640845..3652062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H70_RS16970 (I6H70_16970) - 3642353..3642771 (-) 419 Protein_3348 transposase -
  I6H70_RS16975 (I6H70_16975) - 3643427..3643912 (-) 486 WP_200290943.1 pilin -
  I6H70_RS16980 (I6H70_16980) pilB 3644139..3645842 (+) 1704 WP_200290946.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6H70_RS16985 (I6H70_16985) pilC 3645845..3647062 (+) 1218 WP_200290949.1 type II secretion system F family protein Machinery gene
  I6H70_RS16990 (I6H70_16990) pilD 3647062..3647931 (+) 870 WP_200290952.1 A24 family peptidase Machinery gene
  I6H70_RS16995 (I6H70_16995) coaE 3648025..3648633 (+) 609 WP_200290955.1 dephospho-CoA kinase -
  I6H70_RS17000 (I6H70_17000) yacG 3648630..3648827 (+) 198 WP_074519929.1 DNA gyrase inhibitor YacG -
  I6H70_RS17005 (I6H70_17005) - 3648821..3649531 (-) 711 WP_200290958.1 energy-coupling factor ABC transporter permease -
  I6H70_RS17010 (I6H70_17010) rplM 3649898..3650326 (+) 429 WP_041104003.1 50S ribosomal protein L13 -
  I6H70_RS17015 (I6H70_17015) rpsI 3650341..3650733 (+) 393 WP_041104005.1 30S ribosomal protein S9 -
  I6H70_RS17020 (I6H70_17020) petA 3650987..3651580 (+) 594 WP_200290959.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44057.87 Da        Isoelectric Point: 9.9370

>NTDB_id=524393 I6H70_RS16985 WP_200290949.1 3645845..3647062(+) (pilC) [Stutzerimonas balearica strain FDAARGOS_1013]
MAQKAMRASVFTWEGIDRKGSKVKGELTGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
SGVPLLQSFDIIGEGFDNPNMRKLVDELKQEVAAGNSFAASLRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVIVVAVIVSAILLIKVVPQFQEVFASFGADLPAFTLMVIRLSELLQEWWLIVLLALGGSAYLLG
SMHKRSEKFRNWVDRSVLKLPIVGDIIYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKGDVSSGM
QLNFSMRTTGAFPTMAVQMTAIGEESGSLDEMLGKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=524393 I6H70_RS16985 WP_200290949.1 3645845..3647062(+) (pilC) [Stutzerimonas balearica strain FDAARGOS_1013]
ATGGCGCAGAAAGCGATGCGAGCCAGTGTCTTCACCTGGGAAGGAATCGATCGAAAGGGTTCCAAAGTCAAGGGGGAGCT
CACTGGTGCCAGCCCTGCTTTGGTAAAAGCACAGCTGCGCAAACAGGGCATCAATCCGCAGAAGGTGCGCAAGAAATCCG
TATCCCTGTTCGGGGCCGGCAAAAAGATCAAACCGATGGACATTGCGCTGTTCACTCGGCAGATGGCGACCATGATGAAG
TCCGGCGTGCCGCTCTTGCAGTCGTTCGACATCATCGGTGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGACGA
GTTGAAGCAGGAGGTCGCAGCCGGCAACAGCTTTGCCGCGTCGCTGCGCAAGAAACCTCAGTACTTCGATGATCTTTACT
GCAACCTCGTGGATTCGGGGGAGCAGTCAGGTGCTTTGGAGACCTTGCTCGATAGGGTTGCCACGTACAAGGAAAAAACC
GAAGCACTGAAGGCAAAGATCAAGAAAGCGATGAATTACCCCATCGCGGTGATCGTGGTCGCCGTGATCGTTTCTGCCAT
TTTGCTGATCAAGGTCGTCCCGCAGTTTCAGGAGGTGTTCGCTAGCTTTGGTGCGGATCTCCCCGCGTTCACACTGATGG
TGATCAGGTTGTCGGAATTGCTGCAGGAGTGGTGGCTGATTGTGCTGCTAGCGCTCGGCGGCAGTGCATATCTGTTGGGC
AGCATGCACAAGCGCTCCGAGAAATTCCGCAATTGGGTGGATCGCTCGGTTCTCAAGCTGCCGATCGTGGGCGACATCAT
CTACAAATCTTCCGTGGCGCGATTTGCCCGCACTCTCTCGACGACCTTCGCCGCTGGCGTGCCATTGGTGGATGCGCTGG
ATTCCGTTGCGGGTGCTACCGGCAATGTGGTGTTTCGCAACGCAACGATGAAGGTCAAGGGGGATGTGTCCAGTGGTATG
CAGCTCAACTTTTCCATGCGTACCACCGGGGCTTTCCCGACGATGGCGGTCCAGATGACGGCCATTGGTGAGGAGTCGGG
TTCGCTCGATGAAATGTTGGGAAAGGTGGCTACGTTTTATGAGGATGAGGTCGACAACATGGTTGATGGTCTCACCAGTC
TGATGGAGCCGATGATCATGGCTGTGCTCGGTGTTCTGGTGGGTGGCCTGATCATTGCGATGTATCTGCCGATCTTCCAG
TTGGGTTCCGTAGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

86.914

100

0.869
  pilC Acinetobacter baylyi ADP1

60.837

100

0.61
  pilC Acinetobacter baumannii D1279779

60.247

100

0.602
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria meningitidis 44/76-A

44.697

97.778

0.437
  pilG Neisseria gonorrhoeae MS11

44.697

97.778

0.437
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402