Detailed information NTG0524394

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6H70_RS16990
• Genome accession: NZ_CP067013
• Coordinates: 3647062..3647931 (+)
• Length: 289 a.a.
• NCBI ID: WP_200290952.1
• Uniprot ID: A0A9X7YS68
• Organism: Stutzerimonas balearica strain FDAARGOS_1013
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3642062..3652931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H70_RS16970 (I6H70_16970)	-	3642353..3642771 (-)	419	Protein_3348	transposase	-
I6H70_RS16975 (I6H70_16975)	-	3643427..3643912 (-)	486	WP_200290943.1	pilin	-
I6H70_RS16980 (I6H70_16980)	pilB	3644139..3645842 (+)	1704	WP_200290946.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6H70_RS16985 (I6H70_16985)	pilC	3645845..3647062 (+)	1218	WP_200290949.1	type II secretion system F family protein	Machinery gene
I6H70_RS16990 (I6H70_16990)	pilD	3647062..3647931 (+)	870	WP_200290952.1	A24 family peptidase	Machinery gene
I6H70_RS16995 (I6H70_16995)	coaE	3648025..3648633 (+)	609	WP_200290955.1	dephospho-CoA kinase	-
I6H70_RS17000 (I6H70_17000)	yacG	3648630..3648827 (+)	198	WP_074519929.1	DNA gyrase inhibitor YacG	-
I6H70_RS17005 (I6H70_17005)	-	3648821..3649531 (-)	711	WP_200290958.1	energy-coupling factor ABC transporter permease	-
I6H70_RS17010 (I6H70_17010)	rplM	3649898..3650326 (+)	429	WP_041104003.1	50S ribosomal protein L13	-
I6H70_RS17015 (I6H70_17015)	rpsI	3650341..3650733 (+)	393	WP_041104005.1	30S ribosomal protein S9	-
I6H70_RS17020 (I6H70_17020)	petA	3650987..3651580 (+)	594	WP_200290959.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
I6H70_RS17025 (I6H70_17025)	-	3651580..3652791 (+)	1212	WP_200290962.1	cytochrome bc complex cytochrome b subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31908.83 Da
• Isoelectric Point: 7.2756

>NTDB_id=524394 I6H70_RS16990 WP_200290952.1 3647062..3647931(+) (pilD) [Stutzerimonas balearica strain FDAARGOS_1013]
MPIIEYLASHELAFVLSAALLGLLVGSFLNVLIYRLPVMMQREWREQAREYLSLEPEPVGPRFNLLLPASSCPHCGHSIR
AWENVPLVSWVLLRGRCSACRTGISARYPLVELACALLSGFTAWHFGFTWQAGAILLLGWGLLAMSMIDIDHQLLPDSLV
LPLLWLGLICNYFGLFVALGDALWGAVFGYLSLWAVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVIGTISLRWRNAAAGTPIPFGPYLAIAGWIALVWGQQITDRYLQLAGF

Nucleotide

• Length: 870 bp

>NTDB_id=524394 I6H70_RS16990 WP_200290952.1 3647062..3647931(+) (pilD) [Stutzerimonas balearica strain FDAARGOS_1013]
ATGCCGATCATCGAGTACCTGGCCAGCCACGAGCTGGCCTTTGTTTTGTCTGCGGCTTTGCTTGGATTGCTGGTTGGCAG
CTTTCTCAATGTGCTGATTTATCGGCTGCCGGTGATGATGCAGCGGGAATGGCGCGAGCAGGCGAGGGAGTACCTTTCGC
TCGAGCCTGAGCCTGTCGGGCCGCGATTCAACCTTTTGCTGCCTGCTTCTTCCTGTCCGCACTGTGGCCACTCTATTCGT
GCCTGGGAGAATGTCCCTCTGGTGAGCTGGGTGCTGCTGCGGGGGCGCTGTTCGGCATGTCGAACAGGTATCAGTGCCCG
TTATCCGCTGGTGGAGCTGGCCTGTGCGCTGCTTTCGGGGTTCACGGCCTGGCACTTCGGCTTCACCTGGCAAGCCGGGG
CGATCCTGCTGTTGGGCTGGGGGCTGCTGGCCATGAGCATGATCGATATCGATCACCAGTTGCTGCCCGACTCGCTCGTG
CTGCCTCTTCTCTGGCTCGGCCTGATCTGCAACTATTTCGGCCTATTCGTTGCGCTCGGCGATGCGCTTTGGGGAGCTGT
CTTCGGCTACCTCAGCCTGTGGGCGGTGTACTGGCTATTCAAGCTCGTCACTGGCAAAGAAGGCATGGGCTACGGTGACT
TCAAGCTTCTTGCGATGATAGGGGCGTGGGGGGGGTGGCAGGTGCTGCCGCTAACCATCCTCCTGTCATCGCTGGTCGGC
GCCGTAATCGGCACGATTTCACTGCGATGGCGGAATGCGGCTGCCGGCACGCCTATCCCGTTCGGCCCGTACCTGGCGAT
CGCCGGCTGGATCGCGCTGGTGTGGGGGCAGCAGATCACCGATCGCTATCTGCAGCTTGCCGGCTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.945	94.464	0.519
pilD	Vibrio campbellii strain DS40M4	53.48	94.464	0.505
pilD	Acinetobacter baumannii D1279779	49.648	98.27	0.488
pilD	Acinetobacter nosocomialis M2	49.648	98.27	0.488
pilD	Neisseria gonorrhoeae MS11	50.57	91.003	0.46