Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JH259_RS06050 Genome accession   NZ_CP067005
Coordinates   1425739..1426998 (-) Length   419 a.a.
NCBI ID   WP_070690003.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 54-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1420739..1431998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH259_RS06020 (JH259_06000) - 1420969..1422303 (+) 1335 WP_019237347.1 HAMP domain-containing sensor histidine kinase -
  JH259_RS06025 (JH259_06005) - 1422446..1422937 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  JH259_RS06030 (JH259_06010) - 1422934..1423224 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  JH259_RS06035 (JH259_06015) - 1423299..1423700 (-) 402 WP_267314850.1 SymE family type I addiction module toxin -
  JH259_RS06040 (JH259_06020) coaE 1424232..1424855 (-) 624 WP_040940796.1 dephospho-CoA kinase -
  JH259_RS06045 (JH259_06025) - 1424869..1425732 (-) 864 WP_267314851.1 A24 family peptidase -
  JH259_RS06050 (JH259_06030) pilC 1425739..1426998 (-) 1260 WP_070690003.1 type II secretion system F family protein Machinery gene
  JH259_RS06055 (JH259_06035) pilA2 1427349..1427768 (+) 420 WP_116670568.1 pilin Machinery gene
  JH259_RS06060 (JH259_06040) pilB 1428011..1429717 (+) 1707 WP_181920283.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH259_RS06065 (JH259_06045) - 1429900..1430637 (-) 738 WP_070690009.1 zeta toxin family protein -
  JH259_RS06070 (JH259_06050) - 1430637..1430993 (-) 357 WP_139328384.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46016.50 Da        Isoelectric Point: 10.2875

>NTDB_id=524162 JH259_RS06050 WP_070690003.1 1425739..1426998(-) (pilC) [Xanthomonas campestris pv. campestris strain 54-3]
MSVARSAIKKQPIDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=524162 JH259_RS06050 WP_070690003.1 1425739..1426998(-) (pilC) [Xanthomonas campestris pv. campestris strain 54-3]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGATCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372