Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J6O11_RS09725 Genome accession   NZ_CP081774
Coordinates   1978593..1980020 (+) Length   475 a.a.
NCBI ID   WP_001618667.1    Uniprot ID   -
Organism   Escherichia coli strain 0H24     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1973593..1985020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O11_RS09700 (J6O11_09655) - 1973945..1974253 (+) 309 Protein_1900 integrase core domain-containing protein -
  J6O11_RS09705 (J6O11_09660) - 1974255..1975103 (-) 849 Protein_1901 FUSC family protein -
  J6O11_RS09710 (J6O11_09665) sbmC 1975302..1975775 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  J6O11_RS09715 (J6O11_09670) - 1975871..1977091 (+) 1221 WP_000343760.1 ISL3-like element ISKox3 family transposase -
  J6O11_RS09720 (J6O11_09675) dacD 1977218..1978384 (-) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J6O11_RS09725 (J6O11_09680) sbcB 1978593..1980020 (+) 1428 WP_001618667.1 exodeoxyribonuclease I Machinery gene
  J6O11_RS09730 (J6O11_09685) tsuB 1980063..1980290 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J6O11_RS09735 (J6O11_09690) tsuA 1980304..1981362 (-) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  J6O11_RS09740 (J6O11_09695) plaP 1981541..1982899 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J6O11_RS09745 (J6O11_09700) yoeI 1982889..1982951 (-) 63 WP_010723108.1 membrane protein YoeI -
  J6O11_RS09750 (J6O11_09705) - 1983166..1983324 (-) 159 Protein_1910 LysR family transcriptional regulator -
  J6O11_RS09755 (J6O11_09710) - 1983378..1984529 (+) 1152 WP_001254932.1 IS30-like element IS30 family transposase -
  J6O11_RS09760 (J6O11_09715) - 1984542..1984844 (-) 303 Protein_1912 transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54514.84 Da        Isoelectric Point: 5.4700

>NTDB_id=523968 J6O11_RS09725 WP_001618667.1 1978593..1980020(+) (sbcB) [Escherichia coli strain 0H24]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=523968 J6O11_RS09725 WP_001618667.1 1978593..1980020(+) (sbcB) [Escherichia coli strain 0H24]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
AGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585