Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JH289_RS16510 Genome accession   NZ_CP066990
Coordinates   3797029..3798423 (+) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris pv. campestris strain 42-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3792029..3803423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH289_RS16485 (JH289_16430) - 3792087..3792389 (-) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JH289_RS16490 (JH289_16435) - 3792393..3792803 (-) 411 WP_029628876.1 DNA-binding protein -
  JH289_RS16495 (JH289_16440) sucD 3792907..3793782 (-) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  JH289_RS16500 (JH289_16445) sucC 3793807..3794976 (-) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  JH289_RS16505 (JH289_16450) - 3795210..3796820 (+) 1611 WP_011038210.1 HAMP domain-containing sensor histidine kinase -
  JH289_RS16510 (JH289_16455) pilR 3797029..3798423 (+) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  JH289_RS16515 (JH289_16460) pilB 3798841..3800547 (-) 1707 WP_274400977.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH289_RS16520 (JH289_16465) pilA2 3800822..3801232 (-) 411 WP_228424134.1 pilin Machinery gene
  JH289_RS16525 (JH289_16470) pilC 3801584..3802843 (+) 1260 WP_228424132.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=523965 JH289_RS16510 WP_042594919.1 3797029..3798423(+) (pilR) [Xanthomonas campestris pv. campestris strain 42-1]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=523965 JH289_RS16510 WP_042594919.1 3797029..3798423(+) (pilR) [Xanthomonas campestris pv. campestris strain 42-1]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTTGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAGTACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGTGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGTTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACTGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491