Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JH305_RS16530 Genome accession   NZ_CP066988
Coordinates   3793051..3794310 (+) Length   419 a.a.
NCBI ID   WP_228424132.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 42-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788051..3799310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH305_RS16515 (JH305_16450) pilR 3788496..3789890 (+) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  JH305_RS16520 (JH305_16455) pilB 3790308..3792014 (-) 1707 WP_274400977.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH305_RS16525 (JH305_16460) pilA2 3792289..3792699 (-) 411 WP_228424134.1 pilin Machinery gene
  JH305_RS16530 (JH305_16465) pilC 3793051..3794310 (+) 1260 WP_228424132.1 type II secretion system F family protein Machinery gene
  JH305_RS16535 (JH305_16470) - 3794317..3795180 (+) 864 WP_228876553.1 A24 family peptidase -
  JH305_RS16540 (JH305_16475) coaE 3795194..3795817 (+) 624 WP_274398949.1 dephospho-CoA kinase -
  JH305_RS16545 (JH305_16480) - 3796349..3796750 (+) 402 WP_040940795.1 SymE family type I addiction module toxin -
  JH305_RS16550 (JH305_16485) - 3796825..3797115 (+) 291 WP_011038219.1 DUF1778 domain-containing protein -
  JH305_RS16555 (JH305_16490) - 3797112..3797603 (+) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  JH305_RS16560 (JH305_16495) - 3797746..3799080 (-) 1335 WP_237351399.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46002.47 Da        Isoelectric Point: 10.2875

>NTDB_id=523951 JH305_RS16530 WP_228424132.1 3793051..3794310(+) (pilC) [Xanthomonas campestris pv. campestris strain 42-2]
MSVARSAIKKQPVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=523951 JH305_RS16530 WP_228424132.1 3793051..3794310(+) (pilC) [Xanthomonas campestris pv. campestris strain 42-2]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTATTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTCCCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

39

95.465

0.372