Detailed information NTG0523797

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JH308_RS15070
• Genome accession: NZ_CP066979
• Coordinates: 3412835..3414094 (+)
• Length: 419 a.a.
• NCBI ID: WP_070690003.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. campestris strain 55-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3407835..3419094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH308_RS15050 (JH308_15030)	-	3408840..3409196 (+)	357	WP_139328384.1	hypothetical protein	-
JH308_RS15055 (JH308_15035)	-	3409196..3409933 (+)	738	WP_070690009.1	zeta toxin family protein	-
JH308_RS15060 (JH308_15040)	pilB	3410116..3411822 (-)	1707	WP_181920283.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JH308_RS15065 (JH308_15045)	pilA2	3412065..3412484 (-)	420	WP_116670568.1	pilin	Machinery gene
JH308_RS15070 (JH308_15050)	pilC	3412835..3414094 (+)	1260	WP_070690003.1	type II secretion system F family protein	Machinery gene
JH308_RS15075 (JH308_15055)	-	3414101..3414964 (+)	864	WP_267314851.1	A24 family peptidase	-
JH308_RS15080 (JH308_15060)	coaE	3414978..3415601 (+)	624	WP_040940796.1	dephospho-CoA kinase	-
JH308_RS15085 (JH308_15065)	-	3416133..3416534 (+)	402	WP_267314850.1	SymE family type I addiction module toxin	-
JH308_RS15090 (JH308_15070)	-	3416609..3416899 (+)	291	WP_011038219.1	DUF1778 domain-containing protein	-
JH308_RS15095 (JH308_15075)	-	3416896..3417387 (+)	492	WP_011038220.1	GNAT family N-acetyltransferase	-
JH308_RS15100 (JH308_15080)	-	3417530..3418864 (-)	1335	WP_019237347.1	HAMP domain-containing sensor histidine kinase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46016.50 Da
• Isoelectric Point: 10.2875

>NTDB_id=523797 JH308_RS15070 WP_070690003.1 3412835..3414094(+) (pilC) [Xanthomonas campestris pv. campestris strain 55-2]
MSVARSAIKKQPIDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=523797 JH308_RS15070 WP_070690003.1 3412835..3414094(+) (pilC) [Xanthomonas campestris pv. campestris strain 55-2]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGATCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTACTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCAGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.293	94.511	0.513
pilC	Legionella pneumophila strain ERS1305867	52.709	96.897	0.511
pilC	Acinetobacter baylyi ADP1	51.358	96.659	0.496
pilC	Acinetobacter baumannii D1279779	50.123	96.659	0.484
pilG	Neisseria gonorrhoeae MS11	43.358	95.227	0.413
pilG	Neisseria meningitidis 44/76-A	42.857	95.227	0.408
pilC	Vibrio cholerae strain A1552	40.25	95.465	0.384
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372
pilC	Thermus thermophilus HB27	39	95.465	0.372