Detailed information NTG0523637

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JH262_RS16780
• Genome accession: NZ_CP066961
• Coordinates: 3783782..3785041 (+)
• Length: 419 a.a.
• NCBI ID: WP_228424132.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. incanae strain 5057
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3774949..3786548	3783782..3785041	within	0

Gene organization within MGE regions

Location: 3774949..3786548

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JH262_RS16745 (JH262_16680)	sucC	3774949..3776118 (-)	1170	WP_011038209.1	ADP-forming succinate--CoA ligase subunit beta	-
JH262_RS16750 (JH262_16685)	-	3776352..3777962 (+)	1611	WP_223646353.1	HAMP domain-containing sensor histidine kinase	-
JH262_RS16755 (JH262_16690)	pilR	3778171..3779565 (+)	1395	WP_043921909.1	sigma-54 dependent transcriptional regulator	Regulator
JH262_RS16760 (JH262_16695)	-	3779763..3780119 (+)	357	WP_139328384.1	hypothetical protein	-
JH262_RS16765 (JH262_16700)	-	3780119..3780856 (+)	738	WP_070690009.1	zeta toxin family protein	-
JH262_RS16770 (JH262_16705)	pilB	3781039..3782745 (-)	1707	WP_274393759.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JH262_RS16775 (JH262_16710)	pilA2	3783020..3783430 (-)	411	WP_228424134.1	pilin	Machinery gene
JH262_RS16780 (JH262_16715)	pilC	3783782..3785041 (+)	1260	WP_228424132.1	type II secretion system F family protein	Machinery gene
JH262_RS16785 (JH262_16720)	-	3785048..3785911 (+)	864	WP_223646361.1	A24 family peptidase	-
JH262_RS16790 (JH262_16725)	coaE	3785925..3786548 (+)	624	WP_274390763.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46002.47 Da
• Isoelectric Point: 10.2875

>NTDB_id=523637 JH262_RS16780 WP_228424132.1 3783782..3785041(+) (pilC) [Xanthomonas campestris pv. incanae strain 5057]
MSVARSAIKKQPVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=523637 JH262_RS16780 WP_228424132.1 3783782..3785041(+) (pilC) [Xanthomonas campestris pv. incanae strain 5057]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCCCTGTTCGGAGCGGCGGGCAAGAAAATTACCGCCAAAGAC
ATTGCGTTCTTTAGCCGTCAGATGGCGACGATGATGAAGTCAGGCGTGCCCATCGTCAGTTCTCTGGAGATCATCGGCGA
GGGACACAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACTGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAATCTTGTCCGCGCGGGCGAAGGTGCCGGCGTATTGGAG
ACAGTCCTAGATACGGTCGCAACGTACAAAGAGAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTGCTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAGCTACCGGCATTCACTCAGCTGCTCGTCAATGCCTCGCGCTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
CCGGTTGATCCTCAAGGTCCCCGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCACGCACTACTGCCG
TAACGTTCAAGGCAGGCGTACCTCTCGTCGAGGCACTTGGGATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGACGTATCGGTCGGCTATCCGGTGAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATCGGCGAGGAAGCAGGCGCCTTGGATACCATGTTGTTCAAGGTGGCCGACTACTTCG
AGCAGGAAGTCAACAACGCCGTGGACGCGCTCAGCAGCCTGCTTGAACCACTGATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.293	94.511	0.513
pilC	Legionella pneumophila strain ERS1305867	52.709	96.897	0.511
pilC	Acinetobacter baylyi ADP1	51.358	96.659	0.496
pilC	Acinetobacter baumannii D1279779	50.123	96.659	0.484
pilG	Neisseria gonorrhoeae MS11	43.358	95.227	0.413
pilG	Neisseria meningitidis 44/76-A	42.857	95.227	0.408
pilC	Vibrio cholerae strain A1552	40.25	95.465	0.384
pilC	Vibrio campbellii strain DS40M4	39	95.465	0.372
pilC	Thermus thermophilus HB27	39	95.465	0.372