Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JH279_RS16630 Genome accession   NZ_CP066956
Coordinates   3789701..3790957 (+) Length   418 a.a.
NCBI ID   WP_274391840.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. incanae strain 8-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784701..3795957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH279_RS16605 (JH279_16550) - 3784883..3785620 (+) 738 WP_274390758.1 zeta toxin family protein -
  JH279_RS16610 (JH279_16555) pilB 3785803..3787530 (-) 1728 WP_274390759.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JH279_RS16615 (JH279_16560) - 3787608..3788420 (-) 813 WP_274390760.1 sterol desaturase family protein -
  JH279_RS16620 (JH279_16565) comP 3788466..3788876 (-) 411 WP_274390761.1 pilin Machinery gene
  JH279_RS16625 (JH279_16570) comP 3788960..3789400 (-) 441 WP_274390762.1 pilin Machinery gene
  JH279_RS16630 (JH279_16575) pilC 3789701..3790957 (+) 1257 WP_274391840.1 type II secretion system F family protein Machinery gene
  JH279_RS16635 (JH279_16580) - 3790964..3791827 (+) 864 WP_057671659.1 A24 family peptidase -
  JH279_RS16640 (JH279_16585) coaE 3791841..3792464 (+) 624 WP_274390763.1 dephospho-CoA kinase -
  JH279_RS16645 (JH279_16590) - 3792996..3793397 (+) 402 WP_274390764.1 SymE family type I addiction module toxin -
  JH279_RS16650 (JH279_16595) - 3793473..3793763 (+) 291 WP_014508712.1 DUF1778 domain-containing protein -
  JH279_RS16655 (JH279_16600) - 3793748..3794251 (+) 504 WP_343230992.1 GNAT family N-acetyltransferase -
  JH279_RS16660 (JH279_16605) - 3794394..3795728 (-) 1335 WP_019237347.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45714.05 Da        Isoelectric Point: 10.2428

>NTDB_id=523584 JH279_RS16630 WP_274391840.1 3789701..3790957(+) (pilC) [Xanthomonas campestris pv. incanae strain 8-14]
MSAATNMLKKRPVDRGTQLTSFVWEGTDKRGVKMKGEQAARSANMLKAELRRQGITPSTVRPKPKPLFGAAGKKVTSKDI
SFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKQMVGQIRGDIEGGSSLYEAISKHPVQFDELYRNLVRAGEGAGVLET
VLDTVATYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWLV
LIVSAASILAFIFSYKRSPRMQHGMDRMILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEEA
VLRMRDDVSVGYPINMAMKQVNIFPHMVIQMTAIGEEAGALDTMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTVVG
GMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=523584 JH279_RS16630 WP_274391840.1 3789701..3790957(+) (pilC) [Xanthomonas campestris pv. incanae strain 8-14]
ATGTCAGCAGCTACCAATATGTTAAAAAAGCGGCCCGTAGACCGAGGCACACAGCTTACATCGTTCGTGTGGGAAGGCAC
GGATAAGCGCGGCGTGAAAATGAAAGGTGAACAAGCTGCGCGCAGCGCCAACATGCTTAAGGCAGAACTGCGTAGACAGG
GCATCACTCCTAGCACGGTTAGGCCTAAGCCAAAGCCGCTTTTCGGAGCAGCAGGCAAGAAGGTTACGTCGAAGGACATC
TCATTCTTCAGCCGACAGATGGCCACAATGATGAAATCAGGGGTGCCGATAGTTAGCTCTCTGGAGATCATCGGCGAAGG
TCACAAAAATCCCCGTATGAAACAAATGGTCGGACAGATCCGTGGAGATATTGAAGGCGGCTCATCGCTGTATGAAGCTA
TTAGCAAGCATCCAGTTCAATTCGATGAACTTTACCGCAACTTGGTTCGCGCCGGCGAAGGGGCTGGCGTACTAGAAACC
GTATTGGATACAGTAGCAACCTATAAAGAAAACATTGAAGCACTCAAAGGCAAGATCAAGAAAGCGCTTTTCTACCCTGC
GATGGTGGTGGCTGTAGCGCTAATAGTTAGTGCAATTCTACTTATTTTTGTTGTCCCTCAATTTGAGGAGGTATTCAAGG
GCTTTGGCGCAGAATTACCAGCCTTTACCCAGATGATCGTGGCCGCCTCACGCTTTATGGTCAGTTATTGGTGGCTAGTT
TTAATCGTTTCCGCAGCTAGTATATTAGCTTTCATTTTTTCCTATAAGCGCTCCCCTCGCATGCAGCACGGAATGGATAG
AATGATTCTGAAAGTGCCGGTAATTGGACAGATCATGCACAACAGCTCGATCGCTCGATTTGCTCGCACAACAGCTGTTA
CATTTAAAGCAGGCGTTCCACTTGTAGAAGCACTTGGAATCGTGGCTGGCGCCACAGGTAATAAGGTTTATGAAGAAGCA
GTCCTTCGAATGCGCGACGACGTCTCTGTTGGCTACCCAATCAATATGGCCATGAAGCAGGTAAATATATTTCCACATAT
GGTTATTCAGATGACTGCAATTGGTGAAGAAGCCGGTGCATTGGATACAATGCTATTCAAGGTGGCGGAGTACTTTGAGC
AAGAAGTGAATAACGCCGTCGATGCGCTTAGCAGTCTCTTAGAACCTATGATCATGGTTTTCATTGGCACAGTGGTAGGC
GGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.737

0.51
  pilC Legionella pneumophila strain ERS1305867

52.632

95.455

0.502
  pilC Acinetobacter baumannii D1279779

50.739

97.129

0.493
  pilC Acinetobacter baylyi ADP1

51.134

94.976

0.486
  pilG Neisseria gonorrhoeae MS11

44.724

95.215

0.426
  pilG Neisseria meningitidis 44/76-A

44.361

95.455

0.423
  pilC Vibrio cholerae strain A1552

42.25

95.694

0.404
  pilC Vibrio campbellii strain DS40M4

39.152

95.933

0.376