Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JGY88_RS06725 Genome accession   NZ_CP066721
Coordinates   1400222..1400539 (+) Length   105 a.a.
NCBI ID   WP_029377192.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395222..1405539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS06695 (JGY88_06655) - 1395567..1395770 (+) 204 WP_101104276.1 YqgQ family protein -
  JGY88_RS06700 (JGY88_06660) - 1396156..1397142 (+) 987 WP_029377187.1 glucokinase -
  JGY88_RS06705 (JGY88_06665) - 1397142..1397465 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  JGY88_RS06710 (JGY88_06670) - 1397467..1398090 (+) 624 WP_042362617.1 MBL fold metallo-hydrolase -
  JGY88_RS06715 (JGY88_06675) comGA 1398189..1399163 (+) 975 WP_107538647.1 competence type IV pilus ATPase ComGA Machinery gene
  JGY88_RS06720 (JGY88_06680) comGB 1399135..1400202 (+) 1068 WP_101104278.1 competence type IV pilus assembly protein ComGB -
  JGY88_RS06725 (JGY88_06685) comGC 1400222..1400539 (+) 318 WP_029377192.1 competence type IV pilus major pilin ComGC Machinery gene
  JGY88_RS06730 (JGY88_06690) comGD 1400520..1400963 (+) 444 WP_225486921.1 competence type IV pilus minor pilin ComGD -
  JGY88_RS06735 (JGY88_06695) comGF 1401221..1401664 (+) 444 WP_119554503.1 competence type IV pilus minor pilin ComGF -
  JGY88_RS06740 (JGY88_06700) - 1401844..1402344 (+) 501 WP_119554611.1 shikimate kinase -
  JGY88_RS06745 (JGY88_06705) gcvT 1402533..1403624 (+) 1092 WP_225486922.1 glycine cleavage system aminomethyltransferase GcvT -
  JGY88_RS06750 (JGY88_06710) gcvPA 1403642..1404994 (+) 1353 WP_225486923.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11788.86 Da        Isoelectric Point: 8.4952

>NTDB_id=522143 JGY88_RS06725 WP_029377192.1 1400222..1400539(+) (comGC) [Staphylococcus xylosus strain 2.1523]
MNNFKNKFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHIQTTSCEAQLKMVDSQIEAYSLKFNKKPTTMDELVNEG
YIKENQKQCKSGALISINDGEAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=522143 JGY88_RS06725 WP_029377192.1 1400222..1400539(+) (comGC) [Staphylococcus xylosus strain 2.1523]
ATGAATAATTTTAAAAATAAGTTTAACAAAAAGGCATTTACACTCATTGAAATGCTATTGGTTTTACTAATAATAAGTTT
GTTATTAATACTAATAATACCTAATATAGCTAAACAATCCTCACACATACAAACAACTAGTTGTGAAGCGCAGCTCAAAA
TGGTAGATAGTCAAATTGAAGCTTATAGCTTGAAGTTCAATAAGAAACCAACTACTATGGACGAACTCGTTAACGAAGGT
TATATCAAAGAGAACCAAAAACAATGTAAGTCAGGCGCCTTAATATCTATAAATGATGGTGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

70.297

96.19

0.676
  comGC Staphylococcus aureus MW2

70.297

96.19

0.676
  comYC Streptococcus gordonii str. Challis substr. CH1

46.296

100

0.476
  comGC/cglC Streptococcus pneumoniae D39

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae R6

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

39.623

100

0.4
  comGC/cglC Streptococcus pneumoniae Rx1

39.623

100

0.4
  comGC/cglC Streptococcus mitis NCTC 12261

40

100

0.4
  comGC/cglC Streptococcus mitis SK321

41.667

91.429

0.381
  comGC Bacillus subtilis subsp. subtilis str. 168

41.489

89.524

0.371
  comYC Streptococcus mutans UA140

49.351

73.333

0.362
  comYC Streptococcus mutans UA159

49.351

73.333

0.362