Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JGY88_RS06715 Genome accession   NZ_CP066721
Coordinates   1398189..1399163 (+) Length   324 a.a.
NCBI ID   WP_107538647.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 2.1523     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393189..1404163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGY88_RS06680 (JGY88_06640) rpmG 1393298..1393447 (+) 150 WP_002483181.1 50S ribosomal protein L33 -
  JGY88_RS06685 (JGY88_06645) - 1393578..1394120 (+) 543 WP_101104274.1 5-formyltetrahydrofolate cyclo-ligase -
  JGY88_RS06690 (JGY88_06650) - 1394132..1395589 (+) 1458 WP_225486920.1 rhomboid family intramembrane serine protease -
  JGY88_RS06695 (JGY88_06655) - 1395567..1395770 (+) 204 WP_101104276.1 YqgQ family protein -
  JGY88_RS06700 (JGY88_06660) - 1396156..1397142 (+) 987 WP_029377187.1 glucokinase -
  JGY88_RS06705 (JGY88_06665) - 1397142..1397465 (+) 324 WP_029377188.1 MTH1187 family thiamine-binding protein -
  JGY88_RS06710 (JGY88_06670) - 1397467..1398090 (+) 624 WP_042362617.1 MBL fold metallo-hydrolase -
  JGY88_RS06715 (JGY88_06675) comGA 1398189..1399163 (+) 975 WP_107538647.1 competence type IV pilus ATPase ComGA Machinery gene
  JGY88_RS06720 (JGY88_06680) comGB 1399135..1400202 (+) 1068 WP_101104278.1 competence type IV pilus assembly protein ComGB -
  JGY88_RS06725 (JGY88_06685) comGC 1400222..1400539 (+) 318 WP_029377192.1 competence type IV pilus major pilin ComGC Machinery gene
  JGY88_RS06730 (JGY88_06690) comGD 1400520..1400963 (+) 444 WP_225486921.1 competence type IV pilus minor pilin ComGD -
  JGY88_RS06735 (JGY88_06695) comGF 1401221..1401664 (+) 444 WP_119554503.1 competence type IV pilus minor pilin ComGF -
  JGY88_RS06740 (JGY88_06700) - 1401844..1402344 (+) 501 WP_119554611.1 shikimate kinase -
  JGY88_RS06745 (JGY88_06705) gcvT 1402533..1403624 (+) 1092 WP_225486922.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37191.44 Da        Isoelectric Point: 9.3719

>NTDB_id=522142 JGY88_RS06715 WP_107538647.1 1398189..1399163(+) (comGA) [Staphylococcus xylosus strain 2.1523]
MKLLFNSMIEKAINNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSIISILNQRLITNIKGERELVYEQITKEDIYHFFKNSYTLPKDFHNLSYKLNKMSKEGMICETSM
ERYL

Nucleotide


Download         Length: 975 bp        

>NTDB_id=522142 JGY88_RS06715 WP_107538647.1 1398189..1399163(+) (comGA) [Staphylococcus xylosus strain 2.1523]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAATAATGATGCATCAGATATTCATTTTATCCCCGCAGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACACAATGCTGCGCAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTTCTTAGAATATCAACGCTTCCTTTATCTCTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATCTTAT
TGAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAGCCGGTTGAACAATTGATAAATGGCATAACTCAAATATCATTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATTGGAGAAATAAGAGATGCAAACGTAG
CTAAGCATGTTATACAAGCCAGTTTAAGTGGTCACTTAGTACTTTCGACGATTCATGCTAGTAATTGCAAAGGTGTTATC
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCATTAGCATATTAAATCAAAGGCTTATTAC
TAACATAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATATTTATCACTTCTTTAAAAATAGTTATA
CATTACCCAAAGATTTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

62.963

100

0.63
  comGA Staphylococcus aureus N315

62.963

100

0.63