Detailed information NTG0522039

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: JGZ25_RS06840
• Genome accession: NZ_CP066717
• Coordinates: 1425135..1425458 (+)
• Length: 107 a.a.
• NCBI ID: WP_015729165.1
• Uniprot ID: -
• Organism: Staphylococcus pseudintermedius strain DG072
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1420135..1430458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGZ25_RS06815 (JGZ25_06815)	-	1420509..1421660 (+)	1152	WP_015729170.1	SNF2-related protein	-
JGZ25_RS06820 (JGZ25_06820)	-	1421660..1422949 (+)	1290	WP_049770165.1	DUF3440 domain-containing protein	-
JGZ25_RS06825 (JGZ25_06825)	-	1422943..1423449 (+)	507	WP_198463136.1	ParB/RepB/Spo0J family partition protein	-
JGZ25_RS06830 (JGZ25_06830)	comGA	1423562..1424086 (+)	525	WP_256726570.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
JGZ25_RS06835 (JGZ25_06835)	comGB	1424055..1425122 (+)	1068	WP_037542939.1	competence type IV pilus assembly protein ComGB	-
JGZ25_RS06840 (JGZ25_06840)	comGC	1425135..1425458 (+)	324	WP_015729165.1	competence type IV pilus major pilin ComGC	Machinery gene
JGZ25_RS06845 (JGZ25_06845)	comGD	1425436..1425876 (+)	441	WP_014613823.1	competence type IV pilus minor pilin ComGD	-
JGZ25_RS06850 (JGZ25_06850)	-	1425981..1426181 (+)	201	WP_020219623.1	hypothetical protein	-
JGZ25_RS06855 (JGZ25_06855)	-	1426087..1426572 (+)	486	WP_081378286.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
JGZ25_RS06860 (JGZ25_06860)	-	1426736..1427263 (+)	528	WP_014613826.1	shikimate kinase	-
JGZ25_RS06865 (JGZ25_06865)	gcvT	1427421..1428511 (+)	1091	Protein_1313	glycine cleavage system aminomethyltransferase GcvT	-
JGZ25_RS06870 (JGZ25_06870)	gcvPA	1428524..1429873 (+)	1350	WP_014613828.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

• Length: 107 a.a.
• Molecular weight: 12027.26 Da
• Isoelectric Point: 9.0966

>NTDB_id=522039 JGZ25_RS06840 WP_015729165.1 1425135..1425458(+) (comGC) [Staphylococcus pseudintermedius strain DG072]
MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide

• Length: 324 bp

>NTDB_id=522039 JGZ25_RS06840 WP_015729165.1 1425135..1425458(+) (comGC) [Staphylococcus pseudintermedius strain DG072]
ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTTCTGTTAATTAT
TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (10-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus MW2	73.529	95.327	0.701
comGC	Staphylococcus aureus N315	73.529	95.327	0.701
comGC/cglC	Streptococcus mitis SK321	44.898	91.589	0.411
comGC/cglC	Streptococcus pneumoniae D39	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae TIGR4	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae Rx1	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae R6	43.878	91.589	0.402
comYC	Streptococcus suis isolate S10	53.846	72.897	0.393
comYC	Streptococcus gordonii str. Challis substr. CH1	49.398	77.57	0.383
comGC	Bacillus subtilis subsp. subtilis str. 168	44.565	85.981	0.383
comGC/cglC	Streptococcus mitis NCTC 12261	48.78	76.636	0.374
comGC	Lactococcus lactis subsp. cremoris KW2	48.78	76.636	0.374