Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K0819_RS15720 Genome accession   NZ_CP080478
Coordinates   3301828..3302940 (-) Length   370 a.a.
NCBI ID   WP_109884455.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3296828..3307940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS15690 (K0819_15625) hemF 3297289..3298206 (-) 918 WP_029809821.1 oxygen-dependent coproporphyrinogen oxidase -
  K0819_RS15695 (K0819_15630) - 3298254..3298811 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  K0819_RS15700 (K0819_15635) purE 3299011..3299496 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K0819_RS15705 (K0819_15640) - 3299501..3300634 (+) 1134 WP_109884453.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K0819_RS15710 (K0819_15645) - 3300698..3301267 (-) 570 WP_005461441.1 type I DNA topoisomerase -
  K0819_RS15715 (K0819_15650) - 3301346..3301825 (-) 480 WP_005461440.1 DUF494 family protein -
  K0819_RS15720 (K0819_15655) dprA 3301828..3302940 (-) 1113 WP_109884455.1 DNA-processing protein DprA Machinery gene
  K0819_RS15725 (K0819_15660) - 3302924..3304018 (-) 1095 WP_109884457.1 LysM peptidoglycan-binding domain-containing protein -
  K0819_RS15730 (K0819_15665) def 3304157..3304675 (+) 519 WP_005461416.1 peptide deformylase -
  K0819_RS15735 (K0819_15670) fmt 3304709..3305656 (+) 948 WP_025606610.1 methionyl-tRNA formyltransferase -
  K0819_RS15740 (K0819_15675) rsmB 3305737..3307020 (+) 1284 WP_031848633.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39936.56 Da        Isoelectric Point: 6.5005

>NTDB_id=519953 K0819_RS15720 WP_109884455.1 3301828..3302940(-) (dprA) [Vibrio parahaemolyticus strain Vp2015094]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKHLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=519953 K0819_RS15720 WP_109884455.1 3301828..3302940(-) (dprA) [Vibrio parahaemolyticus strain Vp2015094]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTTGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACACTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGGAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGCGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (WHD_DprA)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

58.378

100

0.584
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

38.205

100

0.403
  dprA Neisseria meningitidis MC58

38.205

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.761

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

36.504

100

0.384