Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EHR_RS05105 Genome accession   NC_018081
Coordinates   1059074..1060405 (+) Length   443 a.a.
NCBI ID   WP_014834410.1    Uniprot ID   -
Organism   Enterococcus hirae ATCC 9790     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1054074..1065405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHR_RS05085 (EHR_05530) yfmF 1054340..1055608 (+) 1269 WP_010737266.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EHR_RS05090 (EHR_05535) yfmH 1055601..1056890 (+) 1290 WP_010737267.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EHR_RS05095 (EHR_05540) - 1057121..1058011 (+) 891 WP_010720624.1 RodZ domain-containing protein -
  EHR_RS05100 (EHR_05545) pgsA 1058180..1058758 (+) 579 WP_010737268.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EHR_RS05105 (EHR_05550) cinA 1059074..1060405 (+) 1332 WP_014834410.1 competence/damage-inducible protein A Machinery gene
  EHR_RS05110 (EHR_05555) recA 1060426..1061466 (+) 1041 WP_010720621.1 recombinase RecA Machinery gene
  EHR_RS05115 (EHR_05565) rny 1062035..1063591 (+) 1557 WP_010720620.1 ribonuclease Y -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49113.18 Da        Isoelectric Point: 4.7579

>NTDB_id=51980 EHR_RS05105 WP_014834410.1 1059074..1060405(+) (cinA) [Enterococcus hirae ATCC 9790]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGEELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALPNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDKHAGNQALLVLE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIRNSAV
MQGFDLIRRQLLRKNKCEYLFGFFLLFVIKNDMISTMKCRTDL

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=51980 EHR_RS05105 WP_014834410.1 1059074..1060405(+) (cinA) [Enterococcus hirae ATCC 9790]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAACTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGCTTAGAATCATTACTCC
AATTAGCAGAAACCAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGGAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACTGAAAATAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTACCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCAGACCATGTCTATCTCTTGTTACCTGGACCACCGAGCGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AACCTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCCTTACTTGTTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATAACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACAAGCGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAGGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAATAAATGCGAATATTTGTTCGGTTTTTTCTTGCTTTT
TGTCATTAAAAACGATATGATTAGTACAATGAAATGTCGCACTGATTTGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.976

93.679

0.506
  cinA Streptococcus pneumoniae TIGR4

52.381

94.808

0.497
  cinA Streptococcus pneumoniae Rx1

52.143

94.808

0.494
  cinA Streptococcus mitis SK321

52.143

94.808

0.494
  cinA Streptococcus pneumoniae R6

52.143

94.808

0.494
  cinA Streptococcus pneumoniae D39

52.143

94.808

0.494
  cinA Streptococcus mitis NCTC 12261

51.667

94.808

0.49
  cinA Bacillus subtilis subsp. subtilis str. 168

47.458

93.228

0.442
  cinA Streptococcus suis isolate S10

42.857

94.808

0.406

Multiple sequence alignment