Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EHR_RS05110 Genome accession   NC_018081
Coordinates   1060426..1061466 (+) Length   346 a.a.
NCBI ID   WP_010720621.1    Uniprot ID   A0A1V8X793
Organism   Enterococcus hirae ATCC 9790     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1055426..1066466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHR_RS05090 (EHR_05535) yfmH 1055601..1056890 (+) 1290 WP_010737267.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EHR_RS05095 (EHR_05540) - 1057121..1058011 (+) 891 WP_010720624.1 RodZ domain-containing protein -
  EHR_RS05100 (EHR_05545) pgsA 1058180..1058758 (+) 579 WP_010737268.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EHR_RS05105 (EHR_05550) cinA 1059074..1060405 (+) 1332 WP_014834410.1 competence/damage-inducible protein A Machinery gene
  EHR_RS05110 (EHR_05555) recA 1060426..1061466 (+) 1041 WP_010720621.1 recombinase RecA Machinery gene
  EHR_RS05115 (EHR_05565) rny 1062035..1063591 (+) 1557 WP_010720620.1 ribonuclease Y -
  EHR_RS05120 lanM 1064066..1065649 (+) 1584 WP_042969872.1 type 2 lanthipeptide synthetase LanM -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 37247.48 Da        Isoelectric Point: 4.8219

>NTDB_id=51981 EHR_RS05110 WP_010720621.1 1060426..1061466(+) (recA) [Enterococcus hirae ATCC 9790]
MADDRKAALDAALKKIEKNYGKGSIMKLGEKIDQQVSTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKNYMSTHPEMMAEVSA
LVRAAYGIGEDVEIPEETQAELPLEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=51981 EHR_RS05110 WP_010720621.1 1060426..1061466(+) (recA) [Enterococcus hirae ATCC 9790]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCGTTGAAAAAAATTGAAAAGAACTATGGGAAAGGCTCGATCATGAA
ACTTGGCGAAAAAATCGACCAACAAGTTTCGACTATCCCAAGTGGTTCTCTTGCATTAGATGTTGCTTTAGGTGTTGGTG
GTTACCCACGAGGACGTATCATTGAAGTATATGGTCCTGAAAGTTCAGGTAAGACAACCGTTGCCTTGCATGCAATCGCT
GAAGTACAAAAAAATGGCGGAACAGCCGCTTTTATCGATGCTGAGCATGCCTTAGACCCACAATATGCTCAAAAATTAGG
GGTAAACATTGACGAATTACTTCTTTCACAACCAGATACTGGGGAACAAGGACTAGAAATCGCTGATGCGCTTGTATCAA
GTGGTGCAGTAGATATCGTAGTAGTCGATTCGGTTGCAGCTTTAGTTCCACGTGCTGAAATCGATGGAGAAATGGGTGAC
TCTCACGTAGGGTTACAAGCTCGATTAATGTCACAAGCATTGCGTAAACTATCTGGGTCGATCAATAAAACAAAAACGAT
CGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGAGTGATGTTCGGTAATCCTGAAATCACACCTGGGGGACGTGCAT
TAAAATTCTATGCAACGATTCGTTTAGAAGTGCGCCGTGCGGAACAATTGAAACAAGGAACAGACATTGTTGGGAACCGT
ACGAAGATCAAAGTAGTTAAAAATAAAGTAGCGCCACCATTCAAAATTGCTGAAGTCGATGTGATGTATGGGCAAGGAAT
TTCTCAAGAAGGAGAATTGCTTGATATGGCGGTTGAAAAAGATATCGTTGATAAAAGTGGTGCTTGGTATTCTTACAAAG
AAGATCGTATTGGACAAGGTCGTGAGAATGCAAAAAATTACATGTCCACTCATCCCGAAATGATGGCAGAAGTTTCTGCT
TTAGTCCGGGCGGCTTATGGGATCGGTGAAGATGTAGAAATACCCGAAGAAACGCAAGCAGAACTTCCTTTAGAGGAATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1V8X793

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.651

99.422

0.792

  recA Bacillus subtilis subsp. subtilis str. 168

79.077

93.931

0.743

  recA Streptococcus mitis NCTC 12261

69.591

98.844

0.688

  recA Streptococcus mitis SK321

69.388

99.133

0.688

  recA Streptococcus pneumoniae R6

70.118

97.688

0.685

  recA Streptococcus pneumoniae Rx1

70.118

97.688

0.685

  recA Streptococcus pneumoniae D39

70.118

97.688

0.685

  recA Streptococcus pneumoniae TIGR4

70.118

97.688

0.685

  recA Streptococcus pyogenes NZ131

69.789

95.665

0.668

  recA Streptococcus mutans UA159

67.151

99.422

0.668

  recA Lactococcus lactis subsp. cremoris KW2

67.463

96.821

0.653

  recA Neisseria gonorrhoeae strain FA1090

61.404

98.844

0.607

  recA Neisseria gonorrhoeae MS11

61.404

98.844

0.607

  recA Neisseria gonorrhoeae MS11

61.404

98.844

0.607

  recA Acinetobacter baumannii D1279779

59.483

100

0.598

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.509

0.598

  recA Vibrio cholerae strain A1552

60

98.266

0.59

  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

98.266

0.59

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

95.087

0.584

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.931

0.578

  recA Acinetobacter baylyi ADP1

61.61

93.353

0.575

  recA Helicobacter pylori strain NCTC11637

57.514

100

0.575

  recA Helicobacter pylori 26695

57.514

100

0.575

  recA Ralstonia pseudosolanacearum GMI1000

63.259

90.462

0.572

  recA Pseudomonas stutzeri DSM 10701

60.185

93.642

0.564

  recA Glaesserella parasuis strain SC1401

60.436

92.775

0.561


Multiple sequence alignment