Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FBMFHHBO_RS17675 Genome accession   NZ_CP080452
Coordinates   3679713..3680186 (-) Length   157 a.a.
NCBI ID   WP_000993729.1    Uniprot ID   A0A0D5YCX7
Organism   Acinetobacter baumannii strain MRSN 56     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3674713..3685186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBMFHHBO_RS17655 (FBMFHHBO_17655) - 3676301..3676684 (+) 384 WP_000090000.1 RidA family protein -
  FBMFHHBO_RS17660 (FBMFHHBO_17660) - 3676894..3677088 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  FBMFHHBO_RS17665 (FBMFHHBO_17665) bfr 3677333..3677797 (+) 465 WP_000678123.1 bacterioferritin -
  FBMFHHBO_RS17670 (FBMFHHBO_17670) - 3677840..3679468 (-) 1629 WP_001195775.1 PglL family O-oligosaccharyltransferase -
  FBMFHHBO_RS17675 (FBMFHHBO_17675) pilA 3679713..3680186 (-) 474 WP_000993729.1 pilin Machinery gene
  FBMFHHBO_RS17680 (FBMFHHBO_17680) - 3680532..3681092 (-) 561 WP_000258946.1 TPM domain-containing protein -
  FBMFHHBO_RS17685 (FBMFHHBO_17685) - 3681086..3682168 (-) 1083 WP_001246387.1 TPM domain-containing protein -
  FBMFHHBO_RS17690 (FBMFHHBO_17690) - 3682190..3682780 (-) 591 WP_000846931.1 LemA family protein -
  FBMFHHBO_RS17695 (FBMFHHBO_17695) - 3682911..3683798 (-) 888 WP_001017320.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 15793.78 Da        Isoelectric Point: 4.4982

>NTDB_id=519686 FBMFHHBO_RS17675 WP_000993729.1 3679713..3680186(-) (pilA) [Acinetobacter baumannii strain MRSN 56]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQTYIAKSQVSRAVSESGSLKTVIEDCLNNGKTTVGEAAGECAIGATGSNI
LDGAAQSGETLAAGTGVPQVTLANTGAATIVATFGNSASTALKSTPTTVTWTRTTDGTWTCESTAAEKYNSSACPAA

Nucleotide


Download         Length: 474 bp        

>NTDB_id=519686 FBMFHHBO_RS17675 WP_000993729.1 3679713..3680186(-) (pilA) [Acinetobacter baumannii strain MRSN 56]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCAATTGCGAT
TCCGCAATATCAAACTTATATTGCCAAATCGCAAGTATCACGTGCGGTTAGTGAATCAGGTTCCTTAAAAACTGTAATTG
AAGACTGTTTAAATAATGGTAAAACTACAGTTGGTGAAGCTGCTGGTGAATGTGCTATTGGGGCAACGGGTTCAAATATT
TTAGATGGGGCTGCACAAAGTGGTGAAACTTTAGCTGCTGGAACTGGGGTTCCACAAGTTACATTAGCAAATACAGGCGC
TGCGACAATTGTTGCAACTTTTGGTAATTCTGCTTCTACTGCATTAAAATCTACACCAACTACAGTAACTTGGACTCGTA
CAACAGATGGCACTTGGACATGTGAAAGTACTGCTGCCGAAAAATATAATAGTTCTGCTTGCCCTGCAGCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5VAW

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

44.099

100

0.452
  pilA Pseudomonas aeruginosa PAK

42.581

98.726

0.42
  comP Acinetobacter baylyi ADP1

39.873

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.176

97.452

0.401
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

37.58

100

0.376
  pilA Vibrio cholerae strain A1552

37.58

100

0.376
  pilA Vibrio cholerae C6706

37.58

100

0.376
  pilA/pilA1 Eikenella corrodens VA1

38.562

97.452

0.376
  pilA2 Legionella pneumophila strain ERS1305867

37.179

99.363

0.369