Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | H9K57_RS13155 | Genome accession | NZ_CP066246 |
| Coordinates | 2759465..2759923 (+) | Length | 152 a.a. |
| NCBI ID | WP_025518565.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain DHO76 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2754465..2764923
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9K57_RS13140 (H9K57_13025) | pdhR | 2756498..2757265 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| H9K57_RS13145 (H9K57_13030) | ampD | 2757671..2758222 (-) | 552 | WP_025505040.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| H9K57_RS13150 (H9K57_13035) | nadC | 2758315..2759202 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| H9K57_RS13155 (H9K57_13040) | pilA | 2759465..2759923 (+) | 459 | WP_025518565.1 | pilin | Machinery gene |
| H9K57_RS13160 (H9K57_13045) | pilB | 2759929..2761614 (+) | 1686 | WP_248377479.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| H9K57_RS13165 (H9K57_13050) | pilC | 2761638..2762861 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| H9K57_RS13170 (H9K57_13055) | pilD | 2762926..2763795 (+) | 870 | WP_248377481.1 | A24 family peptidase | Machinery gene |
| H9K57_RS13175 (H9K57_13060) | coaE | 2763796..2764410 (+) | 615 | WP_005480887.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 15847.98 Da Isoelectric Point: 6.9498
>NTDB_id=518885 H9K57_RS13155 WP_025518565.1 2759465..2759923(+) (pilA) [Vibrio parahaemolyticus strain DHO76]
MKHSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGASTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFAFDSAGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
MKHSKQKKQQGFTLIELMIVVAVIGVLASIAIPQYQKYVAKSEVASALATLTGVKTNVEAFAVENGKFPDGASTNETEAD
LGVPTTIPSGSITFTAASSSAGTIKFAFDSAGVSNLVTSKNFELVRASDGTWTCQGSSASPVTDDLLPKNCR
Nucleotide
Download Length: 459 bp
>NTDB_id=518885 H9K57_RS13155 WP_025518565.1 2759465..2759923(+) (pilA) [Vibrio parahaemolyticus strain DHO76]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCTGATGGTGCTAGTACAAATGAAACTGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGTTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGC
GTTTGATAGCGCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTAGTAGCGGTAATTGGTGTTTT
GGCATCTATAGCTATTCCACAGTACCAAAAATACGTTGCGAAGTCCGAGGTAGCATCAGCTCTTGCAACTCTGACTGGCG
TAAAAACTAACGTAGAAGCATTTGCTGTCGAAAATGGTAAATTCCCTGATGGTGCTAGTACAAATGAAACTGAAGCAGAC
TTGGGTGTTCCAACCACTATTCCATCAGGTTCAATAACCTTTACTGCGGCAAGCTCTTCCGCTGGTACAATCAAGTTTGC
GTTTGATAGCGCAGGAGTGAGTAACTTGGTTACTAGTAAAAACTTCGAGCTGGTACGTGCATCTGATGGAACATGGACAT
GTCAAGGTTCTAGCGCAAGCCCGGTAACAGATGATTTGTTACCAAAAAATTGTCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.718 |
100 |
0.5 |
| pilA | Vibrio cholerae strain A1552 |
48.718 |
100 |
0.5 |
| pilA | Vibrio cholerae C6706 |
48.718 |
100 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
42.581 |
100 |
0.434 |
| pilA | Acinetobacter baumannii strain A118 |
42.759 |
95.395 |
0.408 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
44.03 |
88.158 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.426 |
92.763 |
0.375 |
| pilA | Acinetobacter nosocomialis M2 |
37.333 |
98.684 |
0.368 |