Detailed information NTG0518888

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H9K57_RS13170
• Genome accession: NZ_CP066246
• Coordinates: 2762926..2763795 (+)
• Length: 289 a.a.
• NCBI ID: WP_248377481.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain DHO76
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2757926..2768795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9K57_RS13150 (H9K57_13035)	nadC	2758315..2759202 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
H9K57_RS13155 (H9K57_13040)	pilA	2759465..2759923 (+)	459	WP_025518565.1	pilin	Machinery gene
H9K57_RS13160 (H9K57_13045)	pilB	2759929..2761614 (+)	1686	WP_248377479.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H9K57_RS13165 (H9K57_13050)	pilC	2761638..2762861 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
H9K57_RS13170 (H9K57_13055)	pilD	2762926..2763795 (+)	870	WP_248377481.1	A24 family peptidase	Machinery gene
H9K57_RS13175 (H9K57_13060)	coaE	2763796..2764410 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
H9K57_RS13180 (H9K57_13065)	zapD	2764438..2765178 (+)	741	WP_023624252.1	cell division protein ZapD	-
H9K57_RS13185 (H9K57_13070)	yacG	2765247..2765441 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
H9K57_RS13190 (H9K57_13075)	rplS	2765791..2766144 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
H9K57_RS13195 (H9K57_13080)	trmD	2766186..2766929 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
H9K57_RS13200 (H9K57_13085)	rimM	2766957..2767505 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
H9K57_RS13205 (H9K57_13090)	rpsP	2767534..2767782 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.43 Da
• Isoelectric Point: 6.8205

>NTDB_id=518888 H9K57_RS13170 WP_248377481.1 2762926..2763795(+) (pilD) [Vibrio parahaemolyticus strain DHO76]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=518888 H9K57_RS13170 WP_248377481.1 2762926..2763795(+) (pilD) [Vibrio parahaemolyticus strain DHO76]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446