Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   JD965_RS09055 Genome accession   NZ_CP066219
Coordinates   1724559..1725809 (+) Length   416 a.a.
NCBI ID   WP_198698869.1    Uniprot ID   -
Organism   Bacillus siamensis strain B28     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1719559..1730809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS09025 (JD965_09025) yfmH 1719653..1720939 (+) 1287 WP_016936068.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  JD965_RS09030 (JD965_09030) ymfI 1720998..1721726 (+) 729 WP_198698964.1 elongation factor P 5-aminopentanone reductase -
  JD965_RS09035 (JD965_09035) - 1721802..1722059 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  JD965_RS09040 (JD965_09040) - 1722188..1722979 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  JD965_RS09045 (JD965_09045) - 1722998..1723885 (+) 888 WP_047474929.1 helix-turn-helix domain-containing protein -
  JD965_RS09050 (JD965_09050) pgsA 1723960..1724541 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JD965_RS09055 (JD965_09055) cinA 1724559..1725809 (+) 1251 WP_198698869.1 competence/damage-inducible protein A Machinery gene
  JD965_RS09060 (JD965_09060) recA 1725981..1727024 (+) 1044 WP_015417498.1 recombinase RecA Machinery gene
  JD965_RS09065 (JD965_09065) - 1727191..1728372 (+) 1182 WP_016936062.1 serine hydrolase domain-containing protein -
  JD965_RS09070 (JD965_09070) rny 1728665..1730224 (+) 1560 WP_016936061.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45026.27 Da        Isoelectric Point: 5.1463

>NTDB_id=518502 JD965_RS09055 WP_198698869.1 1724559..1725809(+) (cinA) [Bacillus siamensis strain B28]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLADSGAVSKECARELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=518502 JD965_RS09055 WP_198698869.1 1724559..1725809(+) (cinA) [Bacillus siamensis strain B28]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTTGGCCAGATCGCCAATACGAACGCTCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAACGTGTTTTACCACACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCGGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAATACATTGGGACGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
TGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTTATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGATCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGATGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAGAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACAGGCGGACTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTTTTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGT
GTGAAAGCCGAGACGCTCGCAGATAGCGGAGCGGTCAGCAAAGAGTGCGCGCGCGAGCTTGCCGCCGGTGTCAGAAAGCT
GACCGGAAGCGATATCGGTATCAGCTTTACCGGAGTTGCGGGTCCGGATCCGCAGGAAGGGCATGCCCCGGGCCGCGTCT
TTATCGGCATTTCCGCGGAAGGAAAAGAAGAGGTGCATGAATTTAACTTTGCCGGATCAAGAACCGGCATCAGAAAGCGT
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382