Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   JD965_RS09060 Genome accession   NZ_CP066219
Coordinates   1725981..1727024 (+) Length   347 a.a.
NCBI ID   WP_015417498.1    Uniprot ID   A0AAI8N0L5
Organism   Bacillus siamensis strain B28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720981..1732024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JD965_RS09030 (JD965_09030) ymfI 1720998..1721726 (+) 729 WP_198698964.1 elongation factor P 5-aminopentanone reductase -
  JD965_RS09035 (JD965_09035) - 1721802..1722059 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  JD965_RS09040 (JD965_09040) - 1722188..1722979 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  JD965_RS09045 (JD965_09045) - 1722998..1723885 (+) 888 WP_047474929.1 helix-turn-helix domain-containing protein -
  JD965_RS09050 (JD965_09050) pgsA 1723960..1724541 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JD965_RS09055 (JD965_09055) cinA 1724559..1725809 (+) 1251 WP_198698869.1 competence/damage-inducible protein A Machinery gene
  JD965_RS09060 (JD965_09060) recA 1725981..1727024 (+) 1044 WP_015417498.1 recombinase RecA Machinery gene
  JD965_RS09065 (JD965_09065) - 1727191..1728372 (+) 1182 WP_016936062.1 serine hydrolase domain-containing protein -
  JD965_RS09070 (JD965_09070) rny 1728665..1730224 (+) 1560 WP_016936061.1 ribonuclease Y -
  JD965_RS09075 (JD965_09075) - 1730285..1731079 (+) 795 WP_198698870.1 TIGR00282 family metallophosphoesterase -
  JD965_RS09080 (JD965_09080) spoVS 1731280..1731540 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37979.12 Da        Isoelectric Point: 4.7528

>NTDB_id=518503 JD965_RS09060 WP_015417498.1 1725981..1727024(+) (recA) [Bacillus siamensis strain B28]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTEKSEETQEELEFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=518503 JD965_RS09060 WP_015417498.1 1725981..1727024(+) (recA) [Bacillus siamensis strain B28]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGGGAAAAAACGGATACAAGAATTTCAACGGTGCCGAGCGGCTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTGTACGGACCTGAAAGCTCAGGTAAAACGACCGTAGCGCTTCACGCCATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCCCTTGATCCTGTTTATGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTGCTTCTGTCTCAGCCGGATACGGGAGAGCAGGCGCTGGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATAGAAGGTGACATGGGTGACTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGGGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGACGCGCGCTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATCATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGCTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGACAGGGCCGTGAAAATGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAAGAACAA
ATCCGTGAACATTACGGTTTGGACAATAACGGTGTTACGGAAAAATCGGAAGAAACTCAGGAAGAGCTTGAATTTGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.701

100

0.98
  recA Latilactobacillus sakei subsp. sakei 23K

73.235

97.983

0.718
  recA Streptococcus pneumoniae Rx1

66.474

99.712

0.663
  recA Streptococcus pneumoniae D39

66.474

99.712

0.663
  recA Streptococcus pneumoniae R6

66.474

99.712

0.663
  recA Streptococcus pneumoniae TIGR4

66.474

99.712

0.663
  recA Streptococcus mutans UA159

65.988

99.135

0.654
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Neisseria gonorrhoeae strain FA1090

63.478

99.424

0.631
  recA Neisseria gonorrhoeae MS11

63.478

99.424

0.631
  recA Neisseria gonorrhoeae MS11

63.478

99.424

0.631
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

98.271

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.024

94.524

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60

99.424

0.597
  recA Acinetobacter baylyi ADP1

59.71

99.424

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.219

0.559