Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JC616_RS19800 Genome accession   NZ_CP066126
Coordinates   4355397..4356620 (-) Length   407 a.a.
NCBI ID   WP_227104937.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain 32279     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4350397..4361620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS19770 tsaE 4351154..4351639 (+) 486 WP_370445205.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JC616_RS19775 - 4351600..4352838 (+) 1239 WP_107800579.1 N-acetylmuramoyl-L-alanine amidase -
  JC616_RS19780 yacG 4352905..4353093 (-) 189 WP_048409544.1 DNA gyrase inhibitor YacG -
  JC616_RS19785 zapD 4353133..4353891 (-) 759 WP_019100891.1 cell division protein ZapD -
  JC616_RS19790 coaE 4353930..4354541 (-) 612 WP_107800580.1 dephospho-CoA kinase -
  JC616_RS19795 pilD 4354531..4355400 (-) 870 WP_404990255.1 prepilin peptidase Machinery gene
  JC616_RS19800 pilC 4355397..4356620 (-) 1224 WP_227104937.1 type II secretion system F family protein Machinery gene
  JC616_RS19805 pilF 4356692..4358398 (-) 1707 WP_107800583.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JC616_RS19810 - 4358618..4359748 (-) 1131 WP_158274338.1 porin -
  JC616_RS19815 - 4360083..4361498 (+) 1416 WP_227104939.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44692.63 Da        Isoelectric Point: 10.0725

>NTDB_id=517648 JC616_RS19800 WP_227104937.1 4355397..4356620(-) (pilC) [Chromobacterium rhizoryzae strain 32279]
MAVTVAKKATPGFVWEWEGKDKAGKAIRGELRAESEAVAKTQLRRQGINVVKIKRRRAGFGKRITERDITLFTRQLATMM
RAGVPLLQAFDIAAKGHGNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGETGGVLDSLLDKLATYKEK
VMAIKGKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDGFVHYWWLIFGVVFGSLFGF
LYAFKRTPKLQERMDRILLRMPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGASGNQVYADATKRIQNDVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGILIGGLIIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=517648 JC616_RS19800 WP_227104937.1 4355397..4356620(-) (pilC) [Chromobacterium rhizoryzae strain 32279]
ATGGCAGTCACGGTAGCGAAAAAAGCGACGCCGGGCTTTGTCTGGGAGTGGGAAGGCAAGGACAAGGCGGGCAAGGCGAT
ACGCGGGGAATTGAGAGCGGAGTCCGAGGCGGTGGCCAAGACTCAGCTGCGGCGTCAAGGCATCAATGTCGTCAAGATCA
AGCGCCGGCGCGCCGGGTTCGGCAAGCGCATCACCGAGCGGGACATCACCTTGTTCACCCGGCAGCTGGCGACCATGATG
CGCGCCGGCGTACCGCTGTTGCAGGCTTTCGACATCGCGGCCAAGGGCCACGGCAACCCCGCCGTGACCAAGATGCTGCT
GGAAGTGCGCGCGGATGTGGAAACCGGTCTGTCGCTGGCGGAGGCCTTCCGCAAGCGGCCCTTGTACTTCGACAAGCTGT
TCTGCAACATCATCGCCGCGGGCGAAACCGGCGGCGTGCTGGACTCCTTGCTGGACAAGCTGGCCACCTACAAGGAAAAG
GTGATGGCGATCAAGGGCAAGATCAAGTCGGCGCTGATCTATCCGTCGGCTATCGTCGGCACCGCCTTCATCATTACCGC
CGTCATCATGATTTACGTGATTCCGGCGTTCAAGGATTTGTTCTCCAGCTTCGGCGCCAATTTGCCGGCGCCGACCTTGT
TCGTGATCTGGCTGTCGGATGGCTTCGTCCATTACTGGTGGCTGATCTTCGGCGTGGTCTTCGGCAGCCTGTTCGGCTTT
CTCTACGCCTTCAAGCGCACGCCCAAGCTGCAAGAGCGGATGGACCGCATTCTGCTGCGCATGCCGGTGATCGGCGACAT
CATCCGCAAAGCCACCATCGCGCGCTGGGCGCGCACCTTGTCCACCTTGTTCGCCGCCGGGGTGCCGCTGGTGGAAGCGC
TGGATTCGGTGGGCGGCGCCTCCGGCAATCAGGTGTATGCGGATGCCACCAAGCGGATTCAGAACGACGTCAGCACCGGC
TCCAGCCTCAATTATTCGATGCAACGCACCGACTTGTTCCCTAATATGGTGCTGCAAATGACCTCGATCGGCGAGGAGTC
CGGCTCGCTGGACCAGATGCTGGACAAGGTGGCGGATTTTTACGAAGAAGAAGTCGATAATGCGGTGGCCGCGCTGTCCA
GCTTGCTGGAGCCGGCCATCATGGTGATTCTGGGGATCTTGATCGGCGGTTTGATCATTGCGATGTATATGCCGATTTTC
AAAATGGGGCAGGTGGTTGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.96

99.263

0.536
  pilC Pseudomonas stutzeri DSM 10701

52.84

99.509

0.526
  pilG Neisseria gonorrhoeae MS11

53.964

96.069

0.518
  pilG Neisseria meningitidis 44/76-A

53.708

96.069

0.516
  pilC Acinetobacter baylyi ADP1

50

99.754

0.499
  pilC Acinetobacter baumannii D1279779

48.395

99.509

0.482
  pilC Vibrio campbellii strain DS40M4

38.847

98.034

0.381
  pilC Vibrio cholerae strain A1552

38.177

99.754

0.381