Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | JC616_RS19805 | Genome accession | NZ_CP066126 |
| Coordinates | 4356692..4358398 (-) | Length | 568 a.a. |
| NCBI ID | WP_107800583.1 | Uniprot ID | A0A2T5NM57 |
| Organism | Chromobacterium rhizoryzae strain 32279 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4351692..4363398
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JC616_RS19780 | yacG | 4352905..4353093 (-) | 189 | WP_048409544.1 | DNA gyrase inhibitor YacG | - |
| JC616_RS19785 | zapD | 4353133..4353891 (-) | 759 | WP_019100891.1 | cell division protein ZapD | - |
| JC616_RS19790 | coaE | 4353930..4354541 (-) | 612 | WP_107800580.1 | dephospho-CoA kinase | - |
| JC616_RS19795 | pilD | 4354531..4355400 (-) | 870 | WP_404990255.1 | prepilin peptidase | Machinery gene |
| JC616_RS19800 | pilC | 4355397..4356620 (-) | 1224 | WP_227104937.1 | type II secretion system F family protein | Machinery gene |
| JC616_RS19805 | pilF | 4356692..4358398 (-) | 1707 | WP_107800583.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JC616_RS19810 | - | 4358618..4359748 (-) | 1131 | WP_158274338.1 | porin | - |
| JC616_RS19815 | - | 4360083..4361498 (+) | 1416 | WP_227104939.1 | deoxyribodipyrimidine photo-lyase | - |
| JC616_RS19820 | - | 4361552..4361932 (-) | 381 | WP_107800586.1 | helix-hairpin-helix domain-containing protein | - |
| JC616_RS19825 | - | 4361966..4362787 (-) | 822 | WP_107800587.1 | inner membrane protein YpjD | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62124.71 Da Isoelectric Point: 5.5900
>NTDB_id=517649 JC616_RS19805 WP_107800583.1 4356692..4358398(-) (pilF) [Chromobacterium rhizoryzae strain 32279]
MEASAGISGLGRALVQNNMLLQQDADAILRQSQASHISFVEQLIQSKKMTAQDVAMFASKTFGYPLLDMSAIDLDQLPKG
VVDDELIASRRLLPLLKRGNKLYVGTSDPTQTSAYHAITFKTGMTVEVVVVEDDKLGKMLGKYGEDATAAIKALENEDFG
DLEFADPDAPADTGAQPDVDDAPVVKFIHKVLLDAINGGASDIHFEPYEKFYRIRYRVDGVLKEISQPPLVLKEKIASRI
KVISKLDISEKRVPQDGRMKLVISKARAIDFRVSTLPTLYGEKIVMRILDSSAANLDIEQLGFEPEQKRLLLDAIGRPYG
MVLVTGPTGSGKTVSLYTCLNLLNKPDINIATAEDPVEINLPGINQVNVNERAGLTFASALKAFLRQDPDVIMVGEIRDF
ETADIAIKAAQTGHMVFSTLHTNNAPATLTRMLNMGVAPFNIASSVLLIMAQRLARRLCAHCKKPADIPEEALLRAGFKK
EELDGSWKPYAPVGCEECRNTGYRGRTGIYEVMPITDAMTRLIMQNGTAIDIADLARKEGMVDLRHAGLLKVKAGLTSLT
EIEAVTNE
MEASAGISGLGRALVQNNMLLQQDADAILRQSQASHISFVEQLIQSKKMTAQDVAMFASKTFGYPLLDMSAIDLDQLPKG
VVDDELIASRRLLPLLKRGNKLYVGTSDPTQTSAYHAITFKTGMTVEVVVVEDDKLGKMLGKYGEDATAAIKALENEDFG
DLEFADPDAPADTGAQPDVDDAPVVKFIHKVLLDAINGGASDIHFEPYEKFYRIRYRVDGVLKEISQPPLVLKEKIASRI
KVISKLDISEKRVPQDGRMKLVISKARAIDFRVSTLPTLYGEKIVMRILDSSAANLDIEQLGFEPEQKRLLLDAIGRPYG
MVLVTGPTGSGKTVSLYTCLNLLNKPDINIATAEDPVEINLPGINQVNVNERAGLTFASALKAFLRQDPDVIMVGEIRDF
ETADIAIKAAQTGHMVFSTLHTNNAPATLTRMLNMGVAPFNIASSVLLIMAQRLARRLCAHCKKPADIPEEALLRAGFKK
EELDGSWKPYAPVGCEECRNTGYRGRTGIYEVMPITDAMTRLIMQNGTAIDIADLARKEGMVDLRHAGLLKVKAGLTSLT
EIEAVTNE
Nucleotide
Download Length: 1707 bp
>NTDB_id=517649 JC616_RS19805 WP_107800583.1 4356692..4358398(-) (pilF) [Chromobacterium rhizoryzae strain 32279]
ATGGAAGCTTCGGCTGGCATTTCCGGCTTGGGTCGGGCCTTGGTGCAAAACAATATGCTGTTGCAGCAGGATGCGGACGC
CATTCTGCGTCAGTCTCAGGCATCGCATATCAGCTTTGTCGAGCAGCTGATTCAGAGCAAGAAGATGACGGCGCAGGATG
TCGCGATGTTCGCGTCCAAGACCTTTGGCTATCCCTTATTGGACATGTCGGCCATTGATCTCGATCAGTTGCCCAAGGGC
GTGGTGGATGACGAATTGATCGCCAGCCGGCGCTTGCTGCCCCTGCTCAAGCGCGGCAACAAGCTGTATGTCGGCACCTC
GGACCCGACTCAGACCTCGGCCTATCACGCCATCACCTTCAAGACCGGGATGACGGTGGAAGTGGTGGTGGTGGAGGACG
ACAAGCTGGGCAAGATGCTCGGCAAGTACGGCGAGGACGCCACCGCCGCGATCAAGGCCCTGGAAAACGAGGATTTTGGC
GATCTCGAATTCGCCGATCCGGACGCGCCGGCGGATACCGGCGCGCAGCCGGACGTCGACGACGCGCCGGTGGTCAAATT
CATCCACAAGGTGTTGCTGGACGCGATCAATGGCGGCGCGTCCGATATCCATTTCGAACCCTATGAGAAGTTCTACCGCA
TCCGTTACCGGGTGGATGGGGTGTTGAAGGAGATCTCGCAGCCGCCCTTGGTGTTGAAGGAAAAGATCGCCTCCCGGATC
AAGGTGATTTCCAAGCTGGATATTTCGGAAAAGCGGGTGCCGCAGGATGGCCGGATGAAGCTGGTCATTTCCAAGGCGCG
GGCGATCGATTTCCGGGTCAGCACCTTACCCACTTTGTACGGCGAAAAGATTGTGATGCGTATTCTGGACTCGTCGGCCG
CGAATCTGGATATCGAGCAGCTCGGCTTCGAGCCGGAGCAGAAACGTTTGTTGCTGGACGCGATCGGGCGTCCCTACGGC
ATGGTGCTGGTGACCGGCCCCACCGGCAGCGGTAAAACGGTGTCGCTGTATACCTGTCTTAATTTGCTGAACAAGCCGGA
CATCAATATCGCCACGGCCGAGGATCCGGTGGAAATCAATTTGCCGGGCATCAATCAGGTCAACGTCAACGAGCGCGCCG
GGTTGACCTTCGCCTCGGCCTTGAAGGCTTTTCTGCGCCAGGATCCGGATGTGATCATGGTGGGCGAGATCCGGGATTTC
GAAACGGCGGACATCGCGATCAAGGCGGCGCAGACCGGTCACATGGTGTTCTCCACCCTGCATACCAATAACGCGCCGGC
GACTTTGACCCGGATGCTGAACATGGGGGTGGCGCCGTTCAATATCGCCAGCTCGGTGTTGCTGATCATGGCGCAGCGTC
TGGCGCGCCGTTTGTGCGCGCATTGCAAGAAGCCGGCGGACATTCCCGAAGAGGCGCTGTTGCGGGCGGGTTTCAAGAAA
GAGGAATTGGACGGCAGCTGGAAGCCCTATGCGCCGGTGGGCTGTGAGGAGTGCCGCAATACCGGCTACCGCGGCCGTAC
CGGCATTTACGAAGTGATGCCCATCACCGACGCGATGACGCGTTTGATCATGCAGAACGGCACCGCCATCGATATCGCCG
ATCTGGCGCGCAAGGAGGGCATGGTGGATTTGCGCCACGCCGGCCTGCTGAAGGTCAAGGCGGGCTTGACCTCGTTGACC
GAGATCGAGGCGGTGACCAACGAATAA
ATGGAAGCTTCGGCTGGCATTTCCGGCTTGGGTCGGGCCTTGGTGCAAAACAATATGCTGTTGCAGCAGGATGCGGACGC
CATTCTGCGTCAGTCTCAGGCATCGCATATCAGCTTTGTCGAGCAGCTGATTCAGAGCAAGAAGATGACGGCGCAGGATG
TCGCGATGTTCGCGTCCAAGACCTTTGGCTATCCCTTATTGGACATGTCGGCCATTGATCTCGATCAGTTGCCCAAGGGC
GTGGTGGATGACGAATTGATCGCCAGCCGGCGCTTGCTGCCCCTGCTCAAGCGCGGCAACAAGCTGTATGTCGGCACCTC
GGACCCGACTCAGACCTCGGCCTATCACGCCATCACCTTCAAGACCGGGATGACGGTGGAAGTGGTGGTGGTGGAGGACG
ACAAGCTGGGCAAGATGCTCGGCAAGTACGGCGAGGACGCCACCGCCGCGATCAAGGCCCTGGAAAACGAGGATTTTGGC
GATCTCGAATTCGCCGATCCGGACGCGCCGGCGGATACCGGCGCGCAGCCGGACGTCGACGACGCGCCGGTGGTCAAATT
CATCCACAAGGTGTTGCTGGACGCGATCAATGGCGGCGCGTCCGATATCCATTTCGAACCCTATGAGAAGTTCTACCGCA
TCCGTTACCGGGTGGATGGGGTGTTGAAGGAGATCTCGCAGCCGCCCTTGGTGTTGAAGGAAAAGATCGCCTCCCGGATC
AAGGTGATTTCCAAGCTGGATATTTCGGAAAAGCGGGTGCCGCAGGATGGCCGGATGAAGCTGGTCATTTCCAAGGCGCG
GGCGATCGATTTCCGGGTCAGCACCTTACCCACTTTGTACGGCGAAAAGATTGTGATGCGTATTCTGGACTCGTCGGCCG
CGAATCTGGATATCGAGCAGCTCGGCTTCGAGCCGGAGCAGAAACGTTTGTTGCTGGACGCGATCGGGCGTCCCTACGGC
ATGGTGCTGGTGACCGGCCCCACCGGCAGCGGTAAAACGGTGTCGCTGTATACCTGTCTTAATTTGCTGAACAAGCCGGA
CATCAATATCGCCACGGCCGAGGATCCGGTGGAAATCAATTTGCCGGGCATCAATCAGGTCAACGTCAACGAGCGCGCCG
GGTTGACCTTCGCCTCGGCCTTGAAGGCTTTTCTGCGCCAGGATCCGGATGTGATCATGGTGGGCGAGATCCGGGATTTC
GAAACGGCGGACATCGCGATCAAGGCGGCGCAGACCGGTCACATGGTGTTCTCCACCCTGCATACCAATAACGCGCCGGC
GACTTTGACCCGGATGCTGAACATGGGGGTGGCGCCGTTCAATATCGCCAGCTCGGTGTTGCTGATCATGGCGCAGCGTC
TGGCGCGCCGTTTGTGCGCGCATTGCAAGAAGCCGGCGGACATTCCCGAAGAGGCGCTGTTGCGGGCGGGTTTCAAGAAA
GAGGAATTGGACGGCAGCTGGAAGCCCTATGCGCCGGTGGGCTGTGAGGAGTGCCGCAATACCGGCTACCGCGGCCGTAC
CGGCATTTACGAAGTGATGCCCATCACCGACGCGATGACGCGTTTGATCATGCAGAACGGCACCGCCATCGATATCGCCG
ATCTGGCGCGCAAGGAGGGCATGGTGGATTTGCGCCACGCCGGCCTGCTGAAGGTCAAGGCGGGCTTGACCTCGTTGACC
GAGATCGAGGCGGTGACCAACGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Neisseria gonorrhoeae MS11 |
56.283 |
99.472 |
0.56 |
| pilB | Acinetobacter baumannii D1279779 |
53.886 |
100 |
0.549 |
| pilB | Acinetobacter baylyi ADP1 |
53.819 |
99.12 |
0.533 |
| pilB | Legionella pneumophila strain ERS1305867 |
52.297 |
99.648 |
0.521 |
| pilB | Vibrio cholerae strain A1552 |
49.91 |
98.063 |
0.489 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
46.797 |
98.944 |
0.463 |
| pilB | Vibrio campbellii strain DS40M4 |
45.826 |
99.12 |
0.454 |
| pilF | Thermus thermophilus HB27 |
38.23 |
99.472 |
0.38 |
| pilB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
37.79 |
98.768 |
0.373 |