NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JC616_RS19795	Genome accession	NZ_CP066126
Coordinates	4354531..4355400 (-)	Length	289 a.a.
NCBI ID	WP_404990255.1	Uniprot ID	-
Organism	Chromobacterium rhizoryzae strain 32279
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4349531..4360400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC616_RS19760	-	4349653..4350069 (+)	417	WP_107800577.1	MaoC family dehydratase	-
JC616_RS19765	queG	4350073..4351155 (-)	1083	WP_370445204.1	tRNA epoxyqueuosine(34) reductase QueG	-
JC616_RS19770	tsaE	4351154..4351639 (+)	486	WP_370445205.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
JC616_RS19775	-	4351600..4352838 (+)	1239	WP_107800579.1	N-acetylmuramoyl-L-alanine amidase	-
JC616_RS19780	yacG	4352905..4353093 (-)	189	WP_048409544.1	DNA gyrase inhibitor YacG	-
JC616_RS19785	zapD	4353133..4353891 (-)	759	WP_019100891.1	cell division protein ZapD	-
JC616_RS19790	coaE	4353930..4354541 (-)	612	WP_107800580.1	dephospho-CoA kinase	-
JC616_RS19795	pilD	4354531..4355400 (-)	870	WP_404990255.1	prepilin peptidase	Machinery gene
JC616_RS19800	pilC	4355397..4356620 (-)	1224	WP_227104937.1	type II secretion system F family protein	Machinery gene
JC616_RS19805	pilF	4356692..4358398 (-)	1707	WP_107800583.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JC616_RS19810	-	4358618..4359748 (-)	1131	WP_158274338.1	porin	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 31932.99 Da Isoelectric Point: 7.6374

                                >NTDB_id=517647 JC616_RS19795 WP_404990255.1 4354531..4355400(-) (pilD) [Chromobacterium rhizoryzae strain 32279]

MMEEWRWIAGSYPLAFAGAALVLGLLLGSFLNVLIHRLPKMLEAEWRRNCVDCLQLEESEAVEPYNLMRPASHCPQCRAV

VRPWQNIPLLSFLLLRGRCASCRVNIPWRYPAVELSAGVLFAFLAWRYGWSAQLPAYMALTAVLLALTFIDADTQLLPDN

LTLPLLWGGLLFNLLTGTVPLADAVIGAMAGYLSLWLLFHGFKLVTGKEGMGYGDFKLLAALGAWLGWTLLPLVILLSSL

VGAVVGVVLILLAKHGRGQPLPFGPYLAAAGWIALIWGQDIVYWYLHGY

Nucleotide

Download Length: 870 bp

                                >NTDB_id=517647 JC616_RS19795 WP_404990255.1 4354531..4355400(-) (pilD) [Chromobacterium rhizoryzae strain 32279]

ATGATGGAGGAGTGGCGCTGGATCGCCGGCTCGTACCCGCTGGCTTTCGCCGGCGCGGCGCTGGTGCTGGGTTTGTTGCT

TGGCAGTTTTCTGAATGTGCTCATCCATCGTTTGCCCAAGATGCTGGAAGCCGAATGGCGGCGGAATTGCGTTGATTGTC

TGCAGCTGGAGGAGAGCGAGGCGGTCGAGCCCTATAATTTAATGCGGCCGGCCTCGCACTGCCCGCAATGCCGGGCCGTG

GTGCGTCCGTGGCAGAACATTCCGCTGTTGAGCTTCCTGTTGCTGCGCGGCCGCTGCGCGAGCTGCCGAGTCAACATCCC

TTGGCGTTATCCGGCGGTGGAGCTGTCGGCCGGCGTATTGTTCGCTTTCCTGGCCTGGCGTTATGGGTGGTCGGCGCAAT

TGCCGGCCTATATGGCCTTGACCGCGGTGCTCTTGGCGCTGACTTTCATCGATGCGGACACGCAGCTGCTGCCGGACAAC

CTGACCTTGCCCTTGCTGTGGGGCGGCTTGCTGTTCAACCTGCTGACCGGAACCGTGCCCTTGGCCGACGCGGTGATAGG

CGCGATGGCCGGCTATCTGAGCTTGTGGCTGTTGTTTCACGGTTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTATG

GCGACTTCAAGCTGCTGGCCGCCTTGGGCGCCTGGCTGGGATGGACCTTGCTGCCTTTGGTGATCCTGCTGTCCTCGCTG

GTGGGCGCGGTGGTGGGCGTGGTCTTGATTTTGCTGGCCAAGCACGGTCGTGGCCAGCCCTTGCCGTTTGGCCCTTATCT

AGCGGCCGCCGGCTGGATTGCCCTGATCTGGGGGCAAGACATCGTGTATTGGTATTTGCATGGCTATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio campbellii strain DS40M4	52.347	95.848	0.502
pilD	Neisseria gonorrhoeae MS11	53.137	93.772	0.498
pilD	Vibrio cholerae strain A1552	51.613	96.54	0.498
pilD	Acinetobacter nosocomialis M2	48.339	93.772	0.453
pilD	Acinetobacter baumannii D1279779	48.339	93.772	0.453

Detailed information NTG0517647