Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6H55_RS12860 Genome accession   NZ_CP066024
Coordinates   2638496..2638960 (+) Length   154 a.a.
NCBI ID   WP_010748122.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain FDAARGOS_998     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2633875..2670234 2638496..2638960 within 0


Gene organization within MGE regions


Location: 2633875..2670234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H55_RS12825 (I6H55_12825) - 2633875..2634321 (-) 447 WP_010748117.1 hypothetical protein -
  I6H55_RS17855 (I6H55_12830) - 2634605..2634778 (+) 174 WP_369521902.1 ChbG/HpnK family deacetylase -
  I6H55_RS17620 - 2634891..2635082 (-) 192 WP_230209474.1 hypothetical protein -
  I6H55_RS12835 (I6H55_12835) - 2635009..2635233 (+) 225 WP_230209467.1 CPBP family intramembrane glutamic endopeptidase -
  I6H55_RS12840 (I6H55_12840) - 2635364..2635639 (+) 276 WP_010748118.1 DUF2089 family protein -
  I6H55_RS12845 (I6H55_12845) - 2635632..2635922 (+) 291 WP_010748119.1 hypothetical protein -
  I6H55_RS12850 (I6H55_12850) - 2636032..2636223 (+) 192 WP_010748120.1 hypothetical protein -
  I6H55_RS12855 (I6H55_12855) - 2636319..2638499 (+) 2181 WP_034695777.1 DNA topoisomerase 3 -
  I6H55_RS12860 (I6H55_12860) ssb 2638496..2638960 (+) 465 WP_010748122.1 single-stranded DNA-binding protein Machinery gene
  I6H55_RS12865 (I6H55_12865) - 2639069..2639548 (+) 480 WP_010748123.1 hypothetical protein -
  I6H55_RS12870 (I6H55_12870) - 2639781..2639984 (+) 204 WP_002290540.1 hypothetical protein -
  I6H55_RS12875 (I6H55_12875) - 2640381..2640710 (-) 330 WP_010748124.1 hypothetical protein -
  I6H55_RS12880 (I6H55_12880) - 2640831..2641157 (+) 327 Protein_2517 DNA cytosine methyltransferase -
  I6H55_RS12885 (I6H55_12885) - 2641473..2641676 (+) 204 WP_010748125.1 hypothetical protein -
  I6H55_RS12890 (I6H55_12890) - 2641721..2642050 (+) 330 WP_010748126.1 hypothetical protein -
  I6H55_RS12895 (I6H55_12895) - 2642143..2642322 (+) 180 WP_010748127.1 hypothetical protein -
  I6H55_RS12900 (I6H55_12900) - 2642436..2643098 (+) 663 WP_010748128.1 DUF2786 domain-containing protein -
  I6H55_RS12905 (I6H55_12905) - 2643125..2643370 (+) 246 WP_010748129.1 hypothetical protein -
  I6H55_RS12910 (I6H55_12910) - 2643327..2643683 (+) 357 WP_010748130.1 hypothetical protein -
  I6H55_RS17730 - 2643726..2643848 (+) 123 WP_010748131.1 hypothetical protein -
  I6H55_RS17625 - 2643877..2644113 (+) 237 WP_010748132.1 DUF6075 family protein -
  I6H55_RS12920 (I6H55_12920) - 2644719..2645087 (+) 369 WP_010748134.1 BlaI/MecI/CopY family transcriptional regulator -
  I6H55_RS12925 (I6H55_12925) - 2645435..2645680 (+) 246 WP_010748135.1 hypothetical protein -
  I6H55_RS12930 (I6H55_12930) - 2645770..2646612 (+) 843 WP_010748136.1 McbB family protein -
  I6H55_RS12935 (I6H55_12935) - 2646605..2647228 (+) 624 WP_034695557.1 hypothetical protein -
  I6H55_RS12940 (I6H55_12940) - 2647230..2648186 (+) 957 WP_010748138.1 hypothetical protein -
  I6H55_RS12945 (I6H55_12945) - 2648201..2649235 (+) 1035 WP_010748139.1 YcaO-like family protein -
  I6H55_RS12950 (I6H55_12950) - 2649884..2650843 (+) 960 WP_198479181.1 IS30-like element IS6770 family transposase -
  I6H55_RS12955 (I6H55_12955) - 2651009..2651602 (+) 594 WP_010748141.1 ATP-binding cassette domain-containing protein -
  I6H55_RS12960 (I6H55_12960) - 2651813..2652205 (+) 393 WP_034695559.1 hypothetical protein -
  I6H55_RS12965 (I6H55_12965) - 2652861..2652998 (+) 138 WP_080646975.1 teichoic acid D-Ala incorporation-associated protein DltX -
  I6H55_RS12970 (I6H55_12970) dltA 2653010..2654527 (+) 1518 WP_010748143.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  I6H55_RS12975 (I6H55_12975) dltB 2654524..2655723 (+) 1200 WP_005237703.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  I6H55_RS12980 (I6H55_12980) dltC 2655738..2655980 (+) 243 WP_010748144.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  I6H55_RS12985 (I6H55_12985) dltD 2655977..2657251 (+) 1275 WP_010748145.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -
  I6H55_RS12990 (I6H55_12990) - 2657297..2658538 (+) 1242 WP_010748146.1 serine hydrolase domain-containing protein -
  I6H55_RS12995 (I6H55_12995) - 2658893..2659060 (-) 168 WP_010748147.1 hypothetical protein -
  I6H55_RS13000 (I6H55_13000) - 2660226..2660540 (+) 315 WP_010748148.1 ArsR/SmtB family transcription factor -
  I6H55_RS13005 (I6H55_13005) arsB 2660554..2661633 (+) 1080 WP_005237696.1 ACR3 family arsenite efflux transporter -
  I6H55_RS13010 (I6H55_13010) - 2661651..2663318 (+) 1668 WP_010748149.1 FAD-dependent oxidoreductase -
  I6H55_RS13015 (I6H55_13015) - 2663439..2663795 (+) 357 WP_010748150.1 hypothetical protein -
  I6H55_RS13020 (I6H55_13020) - 2664144..2665334 (+) 1191 WP_010748152.1 IS256 family transposase -
  I6H55_RS13025 (I6H55_13025) - 2665846..2666325 (+) 480 WP_010748153.1 GGDEF domain-containing protein -
  I6H55_RS13030 (I6H55_13030) - 2666729..2667799 (+) 1071 WP_010748154.1 chromate transporter -
  I6H55_RS13035 (I6H55_13035) - 2668636..2668839 (+) 204 WP_005225249.1 hypothetical protein -
  I6H55_RS13040 (I6H55_13040) - 2668915..2669064 (-) 150 WP_005237684.1 hypothetical protein -
  I6H55_RS13045 (I6H55_13045) - 2669360..2669560 (+) 201 WP_005237682.1 cold-shock protein -
  I6H55_RS13050 (I6H55_13050) - 2669627..2669842 (+) 216 WP_010748155.1 hypothetical protein -
  I6H55_RS13055 (I6H55_13055) - 2669929..2670234 (+) 306 WP_010748156.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17089.13 Da        Isoelectric Point: 4.9821

>NTDB_id=516538 I6H55_RS12860 WP_010748122.1 2638496..2638960(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_998]
MINNVVLVGRLTRDPELKFTPNGAAVATFTLAVNRNFTNQSGQREADFINCVIWRKPAETLANYAKKGTLLGVTGRIQTR
SYDNPQGQRVYVTEVVAETFQLMESKDVSEQRSNESNETAEKSKPTPPPLPKKETDPFAQSSSAIDLPDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=516538 I6H55_RS12860 WP_010748122.1 2638496..2638960(+) (ssb) [Enterococcus casseliflavus strain FDAARGOS_998]
ATGATCAATAACGTCGTATTAGTAGGAAGATTAACGAGAGATCCAGAATTAAAATTTACACCGAACGGTGCTGCAGTGGC
CACGTTCACTTTGGCCGTGAATCGAAATTTTACCAATCAAAGCGGTCAAAGAGAAGCTGACTTCATCAATTGTGTCATTT
GGCGCAAACCAGCCGAAACCCTTGCCAATTACGCAAAGAAAGGGACGCTTCTCGGCGTGACTGGACGTATTCAGACAAGA
TCTTACGATAACCCACAAGGACAGCGAGTGTACGTCACAGAAGTCGTGGCAGAGACGTTTCAATTAATGGAATCAAAAGA
TGTGTCTGAGCAGCGTTCGAATGAATCCAACGAAACAGCTGAAAAAAGCAAACCAACACCGCCGCCGCTACCTAAAAAAG
AAACGGATCCATTTGCACAAAGCAGCTCGGCAATCGATTTACCAGATGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.623
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

68.831

0.422
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.153

76.623

0.377
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

74.026

0.37
  ssbB/cilA Streptococcus mitis SK321

48.305

76.623

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

48.305

76.623

0.37
  ssbB/cilA Streptococcus pneumoniae D39

48.305

76.623

0.37
  ssbB/cilA Streptococcus pneumoniae R6

48.305

76.623

0.37
  ssbB/cilA Streptococcus mitis NCTC 12261

48.305

76.623

0.37