Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KZO13_RS08940 Genome accession   NZ_CP080056
Coordinates   1891173..1892600 (-) Length   475 a.a.
NCBI ID   WP_073520220.1    Uniprot ID   -
Organism   Escherichia coli strain 18SZHZ655Rt     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1886173..1897600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZO13_RS08910 (KZO13_08915) yeeZ 1886228..1887052 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  KZO13_RS08915 (KZO13_08920) yeeY 1887098..1888027 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KZO13_RS08920 (KZO13_08925) yoeI 1888242..1888304 (+) 63 WP_010723108.1 membrane protein YoeI -
  KZO13_RS08925 (KZO13_08930) plaP 1888294..1889652 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KZO13_RS08930 (KZO13_08935) tsuA 1889831..1890889 (+) 1059 WP_032151755.1 thiosulfate utilization transporter TsuA/YeeE -
  KZO13_RS08935 (KZO13_08940) tsuB 1890903..1891130 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KZO13_RS08940 (KZO13_08945) sbcB 1891173..1892600 (-) 1428 WP_073520220.1 exodeoxyribonuclease I Machinery gene
  KZO13_RS08945 (KZO13_08950) dacD 1892809..1893975 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KZO13_RS08950 (KZO13_08955) sbmC 1894094..1894567 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  KZO13_RS08955 (KZO13_08960) yeeA 1894765..1895823 (+) 1059 WP_001200891.1 FUSC family protein -
  KZO13_RS08960 (KZO13_08965) tmaR 1895995..1896324 (+) 330 WP_000450409.1 DUF496 family protein -
  KZO13_RS08965 (KZO13_08970) - 1896425..1896868 (-) 444 WP_032151754.1 EutP/PduV family microcompartment system protein -
  KZO13_RS08970 (KZO13_08975) pduU 1896873..1897223 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4720

>NTDB_id=516538 KZO13_RS08940 WP_073520220.1 1891173..1892600(-) (sbcB) [Escherichia coli strain 18SZHZ655Rt]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=516538 KZO13_RS08940 WP_073520220.1 1891173..1892600(-) (sbcB) [Escherichia coli strain 18SZHZ655Rt]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579