Detailed information NTG0516132

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: I6H76_RS05105
• Genome accession: NZ_CP065994
• Coordinates: 1011206..1011637 (-)
• Length: 143 a.a.
• NCBI ID: WP_006531747.1
• Uniprot ID: -
• Organism: Streptococcus infantarius strain FDAARGOS_1019
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1006206..1016637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H76_RS05060 (I6H76_05060)	-	1006275..1006910 (-)	636	WP_014334210.1	CPBP family intramembrane glutamic endopeptidase	-
I6H76_RS05065 (I6H76_05065)	-	1006925..1007380 (-)	456	WP_006531739.1	hypothetical protein	-
I6H76_RS05070 (I6H76_05070)	-	1007381..1007581 (-)	201	WP_006531740.1	hypothetical protein	-
I6H76_RS05075 (I6H76_05075)	-	1007597..1007794 (-)	198	WP_006531741.1	helix-turn-helix transcriptional regulator	-
I6H76_RS05080 (I6H76_05080)	-	1007953..1009152 (-)	1200	WP_006531742.1	acetate kinase	-
I6H76_RS05085 (I6H76_05085)	comYH	1009206..1010162 (-)	957	WP_006531743.1	class I SAM-dependent methyltransferase	Machinery gene
I6H76_RS05090 (I6H76_05090)	comGG	1010216..1010566 (-)	351	WP_043878322.1	competence type IV pilus minor pilin ComGG	-
I6H76_RS05095 (I6H76_05095)	comYF	1010538..1010975 (-)	438	WP_006531745.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6H76_RS05100 (I6H76_05100)	comYE	1010959..1011252 (-)	294	WP_006531746.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6H76_RS05105 (I6H76_05105)	comYD	1011206..1011637 (-)	432	WP_006531747.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6H76_RS05110 (I6H76_05110)	comGC/cglC	1011621..1011914 (-)	294	WP_006531748.1	competence type IV pilus major pilin ComGC	Machinery gene
I6H76_RS05115 (I6H76_05115)	comYB	1011914..1012957 (-)	1044	WP_174221225.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6H76_RS05120 (I6H76_05120)	comYA	1012881..1013822 (-)	942	WP_043878331.1	competence type IV pilus ATPase ComGA	Machinery gene
I6H76_RS05125 (I6H76_05125)	-	1013935..1014264 (-)	330	WP_006531751.1	DUF1033 family protein	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 16131.52 Da
• Isoelectric Point: 8.7847

>NTDB_id=516132 I6H76_RS05105 WP_006531747.1 1011206..1011637(-) (comYD) [Streptococcus infantarius strain FDAARGOS_1019]
MKLKNKTLRAFTLIESLLTLVISCFMVIMLSGSVNHIFQSVDETLFFLSFENLYRDTQKLASIKQESQTLQISQDAISNG
ITSVKIPKTVSVDKNYQLVFDKDGGNSSLAKIQFHTETQAIDYQLYIGSGNYKKTETKSVYTP

Nucleotide

• Length: 432 bp

>NTDB_id=516132 I6H76_RS05105 WP_006531747.1 1011206..1011637(-) (comYD) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAAGCTAAAAAATAAAACTCTTCGCGCCTTTACCCTCATCGAAAGTTTGCTGACCTTAGTAATTTCTTGTTTCATGGT
CATCATGCTATCAGGTTCGGTCAATCATATTTTTCAATCGGTCGATGAAACTCTGTTCTTTCTTTCCTTTGAAAATCTTT
ATCGTGACACACAAAAATTGGCCAGTATTAAGCAGGAAAGTCAAACTTTGCAGATATCGCAAGATGCGATTTCAAATGGG
ATCACTAGTGTTAAGATTCCCAAAACTGTATCGGTTGACAAGAATTATCAGCTCGTTTTTGATAAAGATGGGGGCAATTC
GTCTCTTGCTAAGATACAGTTTCATACAGAAACCCAGGCAATCGATTATCAATTGTACATAGGAAGTGGTAACTATAAAA
AAACAGAAACTAAAAGCGTATATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	53.435	91.608	0.49
comYD	Streptococcus mutans UA159	53.435	91.608	0.49
comYD	Streptococcus gordonii str. Challis substr. CH1	45.185	94.406	0.427
comGD/cglD	Streptococcus pneumoniae Rx1	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae D39	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae R6	43.939	92.308	0.406
comGD/cglD	Streptococcus mitis NCTC 12261	43.939	92.308	0.406
comGD/cglD	Streptococcus pneumoniae TIGR4	43.182	92.308	0.399
comGD/cglD	Streptococcus mitis SK321	42.857	93.007	0.399