Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   I6H76_RS05115 Genome accession   NZ_CP065994
Coordinates   1011914..1012957 (-) Length   347 a.a.
NCBI ID   WP_174221225.1    Uniprot ID   -
Organism   Streptococcus infantarius strain FDAARGOS_1019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006914..1017957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H76_RS05065 (I6H76_05065) - 1006925..1007380 (-) 456 WP_006531739.1 hypothetical protein -
  I6H76_RS05070 (I6H76_05070) - 1007381..1007581 (-) 201 WP_006531740.1 hypothetical protein -
  I6H76_RS05075 (I6H76_05075) - 1007597..1007794 (-) 198 WP_006531741.1 helix-turn-helix transcriptional regulator -
  I6H76_RS05080 (I6H76_05080) - 1007953..1009152 (-) 1200 WP_006531742.1 acetate kinase -
  I6H76_RS05085 (I6H76_05085) comYH 1009206..1010162 (-) 957 WP_006531743.1 class I SAM-dependent methyltransferase Machinery gene
  I6H76_RS05090 (I6H76_05090) comGG 1010216..1010566 (-) 351 WP_043878322.1 competence type IV pilus minor pilin ComGG -
  I6H76_RS05095 (I6H76_05095) comYF 1010538..1010975 (-) 438 WP_006531745.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6H76_RS05100 (I6H76_05100) comYE 1010959..1011252 (-) 294 WP_006531746.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6H76_RS05105 (I6H76_05105) comYD 1011206..1011637 (-) 432 WP_006531747.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6H76_RS05110 (I6H76_05110) comGC/cglC 1011621..1011914 (-) 294 WP_006531748.1 competence type IV pilus major pilin ComGC Machinery gene
  I6H76_RS05115 (I6H76_05115) comYB 1011914..1012957 (-) 1044 WP_174221225.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6H76_RS05120 (I6H76_05120) comYA 1012881..1013822 (-) 942 WP_043878331.1 competence type IV pilus ATPase ComGA Machinery gene
  I6H76_RS05125 (I6H76_05125) - 1013935..1014264 (-) 330 WP_006531751.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39720.16 Da        Isoelectric Point: 9.7015

>NTDB_id=516134 I6H76_RS05115 WP_174221225.1 1011914..1012957(-) (comYB) [Streptococcus infantarius strain FDAARGOS_1019]
MSKLKALLGTDILALRKQKSKKLPFKKQQKVIQLFNNLFNSGFNLTEIVSFLRRSQLLAEVYVDSMQESLLSGVRLADMM
AKLGFSDTIVTQIALADVHGNCQQSLLKIDGYLASMSVVRKKLIEVATYPLILLSFLILIMLGLKNYLLPQLENQNFATQ
IISHFPMIFLGGFALLALGILLGVLYAKRLSPIYLYSQLSRLPIFGRYVRFYLTAYYAREWGNLIGQGIELMEIVELMQR
QKSRLFQEIGKDMQEALLSGQSFHQKVLDYPFFLRELSLMIEYGEVKSKLGRELDIYAEETWQNFFSQLTQATQLIQPLV
FVFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=516134 I6H76_RS05115 WP_174221225.1 1011914..1012957(-) (comYB) [Streptococcus infantarius strain FDAARGOS_1019]
ATGAGCAAATTGAAAGCCTTGCTAGGGACGGACATATTAGCCTTGAGGAAGCAAAAATCGAAAAAATTGCCCTTTAAAAA
ACAGCAGAAGGTGATTCAATTATTTAACAATCTCTTTAACAGTGGCTTTAATTTAACAGAAATTGTTTCTTTTTTGAGAC
GAAGTCAATTGTTGGCAGAAGTTTATGTGGATAGTATGCAAGAATCTTTGCTAAGCGGGGTAAGATTGGCAGATATGATG
GCTAAATTAGGCTTTTCAGATACAATTGTCACTCAGATTGCTCTTGCGGATGTTCATGGTAATTGTCAGCAGAGTTTGTT
AAAAATTGATGGCTACTTGGCCAGTATGTCAGTTGTTCGAAAGAAATTGATTGAAGTGGCGACTTATCCTTTGATTTTGC
TCAGCTTTTTAATTCTGATTATGTTGGGCTTGAAAAATTATTTGCTGCCGCAGTTGGAAAATCAAAATTTTGCGACTCAG
ATTATCAGCCATTTTCCTATGATTTTTTTAGGTGGCTTTGCTCTTTTAGCTTTAGGAATTCTGCTTGGGGTTCTGTATGC
CAAGCGCTTATCGCCAATTTATCTGTATAGTCAGTTGAGTCGTTTGCCAATCTTTGGGCGGTACGTGCGTTTTTATTTGA
CCGCCTATTATGCGCGTGAGTGGGGAAATCTTATCGGGCAAGGCATTGAGCTTATGGAGATTGTAGAGCTCATGCAGCGG
CAAAAATCACGCCTTTTTCAGGAAATTGGAAAAGACATGCAGGAAGCTTTATTGTCAGGTCAATCTTTTCATCAGAAAGT
GCTGGATTACCCTTTCTTTTTGCGTGAACTTAGCTTAATGATTGAATACGGCGAGGTTAAGTCAAAATTAGGTCGTGAGT
TAGATATTTATGCCGAAGAGACTTGGCAGAATTTCTTTAGTCAATTGACACAGGCAACGCAGCTGATTCAGCCTTTGGTC
TTTGTCTTTGTTGCTTTAATCATCGTTTTAATTTATGTGGCAATGCTTTTGCCAATGTATCAAAATATGGGAGGAAATTT
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

65.19

91.066

0.594
  comYB Streptococcus mutans UA159

65.19

91.066

0.594
  comYB Streptococcus gordonii str. Challis substr. CH1

58.529

97.983

0.573
  comGB/cglB Streptococcus mitis NCTC 12261

58.16

97.118

0.565
  comGB/cglB Streptococcus mitis SK321

57.27

97.118

0.556
  comGB/cglB Streptococcus pneumoniae Rx1

56.677

97.118

0.55
  comGB/cglB Streptococcus pneumoniae D39

56.677

97.118

0.55
  comGB/cglB Streptococcus pneumoniae R6

56.677

97.118

0.55
  comGB/cglB Streptococcus pneumoniae TIGR4

56.677

97.118

0.55
  comGB Lactococcus lactis subsp. cremoris KW2

51.19

96.83

0.496