NTDB

Overview

Name	comGC	Type	Machinery gene
Locus tag	JC281_RS06320	Genome accession	NZ_CP065920
Coordinates	1326470..1326793 (+)	Length	107 a.a.
NCBI ID	WP_015729165.1	Uniprot ID	-
Organism	Staphylococcus pseudintermedius strain SP_11306-1A
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1321470..1331793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JC281_RS06295 (JC281_06295)	-	1321844..1322995 (+)	1152	WP_015729170.1	SNF2-related protein	-
JC281_RS06300 (JC281_06300)	-	1322995..1324284 (+)	1290	WP_198455994.1	DUF3440 domain-containing protein	-
JC281_RS06305 (JC281_06305)	-	1324281..1324784 (+)	504	WP_238402335.1	IbrB-like domain-containing protein	-
JC281_RS06310 (JC281_06310)	-	1324885..1325421 (+)	537	Protein_1218	ATPase, T2SS/T4P/T4SS family	-
JC281_RS06315 (JC281_06315)	comGB	1325390..1326457 (+)	1068	WP_037542939.1	competence type IV pilus assembly protein ComGB	-
JC281_RS06320 (JC281_06320)	comGC	1326470..1326793 (+)	324	WP_015729165.1	competence type IV pilus major pilin ComGC	Machinery gene
JC281_RS06325 (JC281_06325)	comGD	1326771..1327211 (+)	441	WP_063284397.1	competence type IV pilus minor pilin ComGD	-
JC281_RS06330 (JC281_06330)	-	1327316..1327516 (+)	201	WP_020219623.1	hypothetical protein	-
JC281_RS06335 (JC281_06335)	-	1327635..1327907 (+)	273	WP_226957568.1	competence type IV pilus minor pilin ComGF	-
JC281_RS06340 (JC281_06340)	-	1328071..1328598 (+)	528	WP_014613826.1	shikimate kinase	-
JC281_RS06345 (JC281_06345)	gcvT	1328756..1329847 (+)	1092	WP_065354204.1	glycine cleavage system aminomethyltransferase GcvT	-
JC281_RS06350 (JC281_06350)	gcvPA	1329860..1331209 (+)	1350	WP_065354205.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-

Sequence

Protein

Download Length: 107 a.a. Molecular weight: 12027.26 Da Isoelectric Point: 9.0966

                                >NTDB_id=515194 JC281_RS06320 WP_015729165.1 1326470..1326793(+) (comGC) [Staphylococcus pseudintermedius strain SP_11306-1A]

MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR

EGYIKESQKTCKSGEEITIRDGEAVAS

Nucleotide

Download Length: 324 bp

                                >NTDB_id=515194 JC281_RS06320 WP_015729165.1 1326470..1326793(+) (comGC) [Staphylococcus pseudintermedius strain SP_11306-1A]

ATGATTCAACAACTTAAATTAAAATTCAACAAAAAGAAAGGTTTTACATTAATTGAAATGCTACTTGTTCTGTTAATTAT

TAGTGTACTATTGATTCTCATTATCCCGAATATTGCTAAGCAGTCAGATCATATCCAAAAAACGGGTTGTGCTGCACAAT

TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT

GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAGGTGAAGAGATCACAATCAGAGATGGCGAAGCAGTTGCGTC

ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGC	Staphylococcus aureus MW2	73.529	95.327	0.701
comGC	Staphylococcus aureus N315	73.529	95.327	0.701
comGC/cglC	Streptococcus mitis SK321	44.898	91.589	0.411
comGC/cglC	Streptococcus pneumoniae D39	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae TIGR4	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae Rx1	43.878	91.589	0.402
comGC/cglC	Streptococcus pneumoniae R6	43.878	91.589	0.402
comYC	Streptococcus suis isolate S10	53.846	72.897	0.393
comYC	Streptococcus gordonii str. Challis substr. CH1	49.398	77.57	0.383
comGC	Bacillus subtilis subsp. subtilis str. 168	44.565	85.981	0.383
comGC/cglC	Streptococcus mitis NCTC 12261	48.78	76.636	0.374
comGC	Lactococcus lactis subsp. cremoris KW2	48.78	76.636	0.374

Detailed information NTG0515194