Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLNZ_RS02100 Genome accession   NC_017949
Coordinates   404084..404473 (+) Length   129 a.a.
NCBI ID   WP_011834458.1    Uniprot ID   -
Organism   Lactococcus cremoris subsp. cremoris NZ9000     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 404084..412403 404084..404473 within 0


Gene organization within MGE regions


Location: 404084..412403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNZ_RS02100 (LLNZ_02130) ssbB 404084..404473 (+) 390 WP_011834458.1 single-stranded DNA-binding protein Machinery gene
  LLNZ_RS02105 (LLNZ_02135) groES 404592..404876 (+) 285 WP_011834459.1 co-chaperone GroES -
  LLNZ_RS02110 (LLNZ_02140) groL 404963..406591 (+) 1629 WP_011834460.1 chaperonin GroEL -
  LLNZ_RS02115 (LLNZ_02145) - 406641..407453 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLNZ_RS02125 (LLNZ_02155) - 407644..409071 (-) 1428 WP_011834461.1 cell wall metabolism sensor histidine kinase WalK -
  LLNZ_RS02130 (LLNZ_02160) yycF 409064..409765 (-) 702 WP_003131580.1 response regulator YycF -
  LLNZ_RS02135 (LLNZ_02165) tmk 409943..410578 (+) 636 WP_011834462.1 dTMP kinase -
  LLNZ_RS02140 (LLNZ_02170) - 410711..411571 (+) 861 WP_011834463.1 DNA polymerase III subunit delta' -
  LLNZ_RS02145 (LLNZ_02175) ricT 411621..412403 (+) 783 WP_011834464.1 stage 0 sporulation family protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14697.79 Da        Isoelectric Point: 8.3705

>NTDB_id=51407 LLNZ_RS02100 WP_011834458.1 404084..404473(+) (ssbB) [Lactococcus cremoris subsp. cremoris NZ9000]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=51407 LLNZ_RS02100 WP_011834458.1 404084..404473(+) (ssbB) [Lactococcus cremoris subsp. cremoris NZ9000]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

99.225

100

0.992
  ssbB Streptococcus sobrinus strain NIDR 6715-7

61.538

100

0.62
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

54.615

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372

Multiple sequence alignment