Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I6G22_RS04245 Genome accession   NZ_CP065737
Coordinates   782511..782900 (-) Length   129 a.a.
NCBI ID   WP_023188994.1    Uniprot ID   A0AAW7JCA4
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 776414..782900 782511..782900 within 0


Gene organization within MGE regions


Location: 776414..782900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS04215 (I6G22_04220) tmk 776414..777049 (-) 636 WP_012897230.1 dTMP kinase -
  I6G22_RS04220 (I6G22_04225) yycF 777227..777928 (+) 702 WP_003131580.1 response regulator YycF -
  I6G22_RS04225 (I6G22_04230) - 777921..779363 (+) 1443 WP_012897229.1 sensor histidine kinase -
  I6G22_RS04230 (I6G22_04235) - 779532..780344 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  I6G22_RS04235 (I6G22_04240) groL 780390..782018 (-) 1629 WP_023188993.1 chaperonin GroEL -
  I6G22_RS04240 (I6G22_04245) groES 782107..782391 (-) 285 WP_003131589.1 co-chaperone GroES -
  I6G22_RS04245 (I6G22_04250) ssbB 782511..782900 (-) 390 WP_023188994.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14573.60 Da        Isoelectric Point: 7.0179

>NTDB_id=513716 I6G22_RS04245 WP_023188994.1 782511..782900(-) (ssbB) [Lactococcus lactis strain FDAARGOS_865]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEGEADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=513716 I6G22_RS04245 WP_023188994.1 782511..782900(-) (ssbB) [Lactococcus lactis strain FDAARGOS_865]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAAGGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372