Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6G34_RS10060 Genome accession   NZ_CP065720
Coordinates   2139655..2140875 (+) Length   406 a.a.
NCBI ID   WP_063544459.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain FDAARGOS_877     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2134655..2145875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G34_RS10030 (I6G34_10030) - 2134927..2135670 (-) 744 WP_232244584.1 hypothetical protein -
  I6G34_RS10035 (I6G34_10035) - 2135766..2136575 (-) 810 WP_146030731.1 ABC transporter permease subunit -
  I6G34_RS21035 (I6G34_10040) - 2136638..2136901 (-) 264 WP_102840583.1 type II secretion system protein -
  I6G34_RS10045 (I6G34_10045) - 2136936..2137376 (-) 441 WP_146030732.1 hypothetical protein -
  I6G34_RS20990 (I6G34_10050) - 2137392..2137577 (-) 186 WP_054093589.1 type IV pilin protein -
  I6G34_RS10055 (I6G34_10055) pilB 2137949..2139652 (+) 1704 WP_102840585.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6G34_RS10060 (I6G34_10060) pilC 2139655..2140875 (+) 1221 WP_063544459.1 type II secretion system F family protein Machinery gene
  I6G34_RS10065 (I6G34_10065) pilD 2140879..2141745 (+) 867 WP_102840586.1 A24 family peptidase Machinery gene
  I6G34_RS10070 (I6G34_10070) coaE 2141878..2142486 (+) 609 WP_102840587.1 dephospho-CoA kinase -
  I6G34_RS10075 (I6G34_10075) yacG 2142483..2142680 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  I6G34_RS10080 (I6G34_10080) - 2142705..2143385 (-) 681 WP_102840589.1 energy-coupling factor ABC transporter permease -
  I6G34_RS10085 (I6G34_10085) - 2143424..2144461 (-) 1038 WP_102840590.1 NADP(H)-dependent aldo-keto reductase -
  I6G34_RS10090 (I6G34_10090) rplM 2144901..2145329 (+) 429 WP_063544471.1 50S ribosomal protein L13 -
  I6G34_RS10095 (I6G34_10095) rpsI 2145344..2145736 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44565.56 Da        Isoelectric Point: 9.8649

>NTDB_id=513464 I6G34_RS10060 WP_063544459.1 2139655..2140875(+) (pilC) [Stutzerimonas frequens strain FDAARGOS_877]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALIKAQLRKQGINPLKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFESVFQGFGAELPAFTMMVVQLSRWLQEWWYIVFFALFIAAFLFK
HAYKRSEKFRDSLDRLLLKLPIVGDILYKSVVARYARTLSTTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRTDVSSGV
QLNFSMRTTGIFPTMAIQMTAIGEESGALDEMLDKLASFYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=513464 I6G34_RS10060 WP_063544459.1 2139655..2140875(+) (pilC) [Stutzerimonas frequens strain FDAARGOS_877]
ATGGCGGAAAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACCGACAGAAAAGGTGGCAAGGTCAAGGGGGAGCT
GGCAGGCCAGAGCCCGGCACTGATCAAGGCGCAGCTCCGCAAGCAGGGTATCAATCCGCTGAAGGTTCGCAAGAAGGCCG
TTTCCTTGTTCGGGGCGGGCAAGAAAATCAAGCCGATGGACATCGCACTGTTCACTCGGCAGATGGCCACCATGATGAAG
GCGGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGGCGAGGGCTTCGATAACCCAAACATGCGCAAGCTGGTCGATGA
GATCAAGCAAGAAGTGGCGGCAGGCAACAGCTTTGCTGGCTCGCTGCGTAAGAAGCCGCAATATTTCGATGACCTGTATT
GCAATTTGGTCGAGTCTGGAGAGCAGTCCGGTGCGCTCGAAACGCTGCTGGACCGTGTTGCAACCTACAAGGAAAAAACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCGATGACCTATCCGATTGCGGTTATCGTGGTGGCAATCATCGTATCGGCGAT
TCTCTTGATTAAGGTAGTTCCGCAGTTCGAGAGCGTATTCCAAGGCTTCGGCGCGGAACTTCCAGCGTTTACCATGATGG
TGGTGCAGTTGTCACGTTGGCTGCAGGAGTGGTGGTACATCGTATTCTTTGCGTTGTTCATTGCCGCCTTTTTGTTCAAG
CATGCATATAAACGGTCGGAAAAGTTTCGTGACTCTCTTGATCGCCTTTTGCTCAAGCTGCCGATCGTTGGTGACATTCT
CTACAAGTCCGTAGTTGCGCGATATGCTCGCACATTGTCCACGACATTCGCGGCTGGTGTGCCCTTGGTTGATGCGTTGG
ACTCAGTGGCAGGTGCCACGGGCAACGTCGTGTTCCGCAATGCAGTAGCGAAGATCCGTACGGACGTATCGTCTGGTGTG
CAGCTCAATTTCTCCATGCGCACGACCGGCATTTTTCCCACCATGGCTATTCAAATGACCGCTATCGGCGAGGAGTCCGG
TGCGTTGGACGAGATGCTCGACAAACTGGCCAGTTTCTATGAGGCGGAGGTCGATAACATGGTGGATAACCTGACGACCC
TGATGGAACCGCTGATCATGGCCGTGCTCGGGGTTCTGGTCGGTGGCTTGATCATCGCGATGTATCTGCCGATCTTCCAG
TTGGGTAGTGTGGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

82.469

99.754

0.823
  pilC Acinetobacter baylyi ADP1

63.547

100

0.635
  pilC Acinetobacter baumannii D1279779

62.469

99.754

0.623
  pilC Legionella pneumophila strain ERS1305867

54.545

97.537

0.532
  pilG Neisseria gonorrhoeae MS11

45.522

99.015

0.451
  pilG Neisseria meningitidis 44/76-A

45.522

99.015

0.451
  pilC Vibrio cholerae strain A1552

43.35

100

0.434
  pilC Vibrio campbellii strain DS40M4

41

98.522

0.404