Detailed information NTG0513465

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G34_RS10065
• Genome accession: NZ_CP065720
• Coordinates: 2140879..2141745 (+)
• Length: 288 a.a.
• NCBI ID: WP_102840586.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain FDAARGOS_877
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2135879..2146745

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G34_RS21035 (I6G34_10040)	-	2136638..2136901 (-)	264	WP_102840583.1	type II secretion system protein	-
I6G34_RS10045 (I6G34_10045)	-	2136936..2137376 (-)	441	WP_146030732.1	hypothetical protein	-
I6G34_RS20990 (I6G34_10050)	-	2137392..2137577 (-)	186	WP_054093589.1	type IV pilin protein	-
I6G34_RS10055 (I6G34_10055)	pilB	2137949..2139652 (+)	1704	WP_102840585.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6G34_RS10060 (I6G34_10060)	pilC	2139655..2140875 (+)	1221	WP_063544459.1	type II secretion system F family protein	Machinery gene
I6G34_RS10065 (I6G34_10065)	pilD	2140879..2141745 (+)	867	WP_102840586.1	A24 family peptidase	Machinery gene
I6G34_RS10070 (I6G34_10070)	coaE	2141878..2142486 (+)	609	WP_102840587.1	dephospho-CoA kinase	-
I6G34_RS10075 (I6G34_10075)	yacG	2142483..2142680 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
I6G34_RS10080 (I6G34_10080)	-	2142705..2143385 (-)	681	WP_102840589.1	energy-coupling factor ABC transporter permease	-
I6G34_RS10085 (I6G34_10085)	-	2143424..2144461 (-)	1038	WP_102840590.1	NADP(H)-dependent aldo-keto reductase	-
I6G34_RS10090 (I6G34_10090)	rplM	2144901..2145329 (+)	429	WP_063544471.1	50S ribosomal protein L13	-
I6G34_RS10095 (I6G34_10095)	rpsI	2145344..2145736 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
I6G34_RS10100 (I6G34_10100)	petA	2145991..2146584 (+)	594	WP_063544473.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32129.26 Da
• Isoelectric Point: 7.6233

>NTDB_id=513465 I6G34_RS10065 WP_102840586.1 2140879..2141745(+) (pilD) [Stutzerimonas frequens strain FDAARGOS_877]
MIYELMASHVLAFVLSAAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREFLELPCEPVGERFNLLLPNSRCPHCAHRIRA
WENVPLISWLLLRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAAMMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIVNHFGLFTSLESAVWGAVAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGERITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=513465 I6G34_RS10065 WP_102840586.1 2140879..2141745(+) (pilD) [Stutzerimonas frequens strain FDAARGOS_877]
ATGATCTACGAACTGATGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCAGCTGTGCTCGGCCTGCTGGTTGGCAGTTT
CCTTAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCGAGAGAATTTCTTGAGCTGC
CATGCGAACCGGTCGGCGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGCGCA
TGGGAAAACGTTCCGCTGATCAGTTGGCTGTTGTTGCGTGGCAAGTGTTCCTCCTGCCAGGCGCCGATCAGTTGTCGTTA
CCCGTTGGTGGAGCTGGCATGCGGTGTGCTCTCCGGGTATGTGGCGTGGCATTTCGGCTTTTCCTGGCAGGCCGCCATGA
TGCTGCTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATTGATGTCGATCATCAGTTGTTGCCTGACTCGCTCGTACTA
CCCTTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACCTCCCTGGAAAGCGCTGTGTGGGGGGCGGTGGC
GGGCTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGACTTCA
AGCTGTTGGCGATGCTTGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTTACCATCCTGTTGTCGTCAGTGGTCGGAGCG
GTGCTAGGTTCCATTCTTTTGAAGGTTCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCTTATCTGGCGATCGC
TGGGTGGATCGCGCTTCTCTGGGGTGAAAGGATCACCGAGAGCTATCTGCAATTCGCCCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.77	98.264	0.538
pilD	Vibrio campbellii strain DS40M4	55.678	94.792	0.528
pilD	Neisseria gonorrhoeae MS11	54.753	91.319	0.5
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497