Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I6G50_RS10240 Genome accession   NZ_CP065691
Coordinates   2041221..2041610 (+) Length   129 a.a.
NCBI ID   WP_004259973.1    Uniprot ID   K2NXG7
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2041221..2048138 2041221..2041610 within 0


Gene organization within MGE regions


Location: 2041221..2048138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS10240 (I6G50_10235) ssbB 2041221..2041610 (+) 390 WP_004259973.1 single-stranded DNA-binding protein Machinery gene
  I6G50_RS10245 (I6G50_10240) - 2041669..2042199 (+) 531 WP_197908774.1 ClbS/DfsB family four-helix bundle protein -
  I6G50_RS10250 (I6G50_10245) groES 2042317..2042598 (+) 282 WP_004259981.1 co-chaperone GroES -
  I6G50_RS10255 (I6G50_10250) groL 2042625..2044250 (+) 1626 WP_004259986.1 chaperonin GroEL -
  I6G50_RS10260 (I6G50_10255) - 2044377..2045189 (-) 813 WP_004259990.1 MBL fold metallo-hydrolase -
  I6G50_RS10265 (I6G50_10260) - 2045186..2046604 (-) 1419 WP_197908775.1 ATP-binding protein -
  I6G50_RS10270 (I6G50_10265) yycF 2046597..2047298 (-) 702 WP_004259998.1 response regulator YycF -
  I6G50_RS10275 (I6G50_10270) tmk 2047509..2048138 (+) 630 WP_081165301.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14879.06 Da        Isoelectric Point: 6.9871

>NTDB_id=513036 I6G50_RS10240 WP_004259973.1 2041221..2041610(+) (ssbB) [Lactococcus garvieae strain FDAARGOS_893]
MNKTLLVGRLAADPEISKTTGDKSLLRINLAVKRRYKNTSGERQTDFISLVFWEKLAEHCVSYAKKGVLLAVEGEIRTRM
YMDKQDQKRYVTEVLVNNFDILESRATIALREGNIENEDLDLKENELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=513036 I6G50_RS10240 WP_004259973.1 2041221..2041610(+) (ssbB) [Lactococcus garvieae strain FDAARGOS_893]
ATGAATAAAACACTACTCGTTGGCAGACTTGCTGCAGATCCTGAGATAAGTAAGACCACAGGAGATAAGAGTTTACTTAG
GATAAATTTAGCGGTTAAAAGACGCTATAAAAATACATCAGGAGAAAGGCAAACAGATTTTATTTCCTTAGTTTTTTGGG
AAAAGCTAGCAGAACACTGTGTTTCTTATGCTAAAAAAGGCGTTTTACTTGCTGTGGAGGGAGAAATTCGCACACGGATG
TATATGGACAAGCAGGATCAAAAGCGCTATGTAACTGAAGTATTGGTCAATAATTTTGACATATTAGAGAGTCGTGCTAC
CATAGCTCTGCGAGAGGGAAATATCGAAAATGAAGATCTTGATTTAAAGGAAAATGAACTCCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K2NXG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

61.24

100

0.612
  ssbB Streptococcus sobrinus strain NIDR 6715-7

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

53.077

100

0.535
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.077

100

0.535
  ssbB/cilA Streptococcus pneumoniae Rx1

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae D39

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

52.308

100

0.527
  ssbB/cilA Streptococcus mitis SK321

52.308

100

0.527
  ssbA Streptococcus mutans UA159

52.308

100

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

38.71

96.124

0.372