Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6G50_RS08415 Genome accession   NZ_CP065691
Coordinates   1682016..1682510 (-) Length   164 a.a.
NCBI ID   WP_003134953.1    Uniprot ID   -
Organism   Lactococcus garvieae strain FDAARGOS_893     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677016..1687510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G50_RS08385 (I6G50_08380) recX 1677316..1678149 (+) 834 WP_197908538.1 recombination regulator RecX -
  I6G50_RS08390 (I6G50_08385) - 1678234..1679082 (+) 849 WP_003134947.1 MurR/RpiR family transcriptional regulator -
  I6G50_RS08395 (I6G50_08390) - 1679115..1679423 (+) 309 WP_197908540.1 DUF960 domain-containing protein -
  I6G50_RS08400 (I6G50_08395) - 1679450..1680217 (-) 768 WP_197908542.1 metallophosphoesterase -
  I6G50_RS08405 (I6G50_08400) - 1680386..1681594 (-) 1209 WP_042753102.1 hypothetical protein -
  I6G50_RS08410 (I6G50_08405) rpsR 1681696..1681941 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  I6G50_RS08415 (I6G50_08410) ssb 1682016..1682510 (-) 495 WP_003134953.1 single-stranded DNA-binding protein Machinery gene
  I6G50_RS08420 (I6G50_08415) rpsF 1682547..1682840 (-) 294 WP_003134954.1 30S ribosomal protein S6 -
  I6G50_RS08425 (I6G50_08420) - 1683023..1683235 (-) 213 WP_003134955.1 hypothetical protein -
  I6G50_RS08430 (I6G50_08425) - 1683713..1685176 (+) 1464 WP_197908544.1 amino acid permease -
  I6G50_RS08435 (I6G50_08430) - 1685224..1686852 (-) 1629 WP_197908546.1 DUF6273 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18162.00 Da        Isoelectric Point: 4.7815

>NTDB_id=513023 I6G50_RS08415 WP_003134953.1 1682016..1682510(-) (ssb) [Lactococcus garvieae strain FDAARGOS_893]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGGGSYSAPQQQQSQNRPFAESNNSSNNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=513023 I6G50_RS08415 WP_003134953.1 1682016..1682510(-) (ssb) [Lactococcus garvieae strain FDAARGOS_893]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGATCCCGAGCTGCGTTACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAATCGCCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATCAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCTTTGATTGGTGTGACAGGTAGTATTCAAGTACGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGCCGTGC
CGCACGTGAAGGGGGAGGCGGTTCATATTCTGCACCCCAACAGCAACAATCACAAAATCGTCCTTTTGCTGAATCTAATA
ATTCATCAAATAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCGATGGAAATATCAGATGAT
GATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.585
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.448

100

0.567
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.727

80.488

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372