Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6G67_RS01110 Genome accession   NZ_CP065666
Coordinates   210639..212717 (+) Length   692 a.a.
NCBI ID   WP_004691495.1    Uniprot ID   A0A380U7X7
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 205639..217717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS01090 (I6G67_01090) pilM 207659..208717 (+) 1059 WP_004691499.1 pilus assembly protein PilM Machinery gene
  I6G67_RS01095 (I6G67_01095) pilN 208717..209373 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6G67_RS01100 (I6G67_01100) pilO 209370..210092 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6G67_RS01105 (I6G67_01105) pilP 210092..210619 (+) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  I6G67_RS01110 (I6G67_01110) pilQ 210639..212717 (+) 2079 WP_004691495.1 type IV pilus secretin PilQ Machinery gene
  I6G67_RS01115 (I6G67_01115) aroK 212755..213288 (+) 534 WP_004691494.1 shikimate kinase AroK -
  I6G67_RS01120 (I6G67_01120) aroB 213319..214404 (+) 1086 WP_004691493.1 3-dehydroquinate synthase -
  I6G67_RS01125 (I6G67_01125) - 214412..215251 (+) 840 WP_017397246.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75080.43 Da        Isoelectric Point: 5.1469

>NTDB_id=512773 I6G67_RS01110 WP_004691495.1 210639..212717(+) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_910]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWS
AKKLGNSPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALMVEKDSIGDITNDGIAIDTSELQTNVLVDDGETVVLGGIFD
DVKRNDYEKVPFLADLPVVGNLFKNNVKTTMQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=512773 I6G67_RS01110 WP_004691495.1 210639..212717(+) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCGCGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAACGATGGCAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATTCGTCGCATGATTGACTTGTTGGATGTCG
CAGTGAAACAGGTGATGGTCGAAGCACGTATTGTCACAGCATCAACAGACTTTTCTCGTGAATTGGGGATTAAGTGGAGT
GCGAAGAAGCTGGGCAATAGCCCAGTGTGGGGTGGAGATTTCCAGCCAAGTTTTGATTTGGGTGTGGATTTAGCAACAAA
CACTGCTGGTACGTTTAACTTTGGTTTGTTGAAAATTTCAGACTATATGTTAAACCTTGAGTTAAGCGCACTTCAAGCGG
ATGGTCATGGTGAAGTGTTATCAGCGCCTAAAGTACTTACTGGCGATAAACAGAAAGCCTATATCTTGCGTGGTACAGAG
ATTCCTTATCAAACATGGAGTGCGACGGAAGGTTTAAAAACTGAGTTTCGCGCGGCTAACTTAAAGTTAGAAGTGACGCC
AAGTATTACTCCAGATGGTAAAGTTCAAATGGCGCTCATGGTTGAAAAAGACTCGATTGGTGATATCACCAATGATGGTA
TTGCGATTGACACCAGTGAATTACAAACCAATGTCTTGGTAGATGATGGTGAGACGGTTGTACTGGGTGGCATTTTTGAT
GATGTGAAGCGTAATGACTATGAAAAAGTGCCATTTCTAGCTGATTTACCAGTGGTGGGGAATTTATTTAAGAACAATGT
CAAAACTACCATGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Secretin and TonB N terminus short domain (STN)

(305-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U7X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.958

100

0.678
  pilQ Acinetobacter baumannii strain A118

64.82

100

0.676
  comQ Acinetobacter baylyi ADP1

62.958

100

0.646
  pilQ Pseudomonas aeruginosa PAK

39.306

100

0.393
  pilQ Legionella pneumophila strain Lp02

37.591

99.566

0.374
  pilQ Legionella pneumophila strain ERS1305867

37.87

97.688

0.37
  pilQ Neisseria gonorrhoeae strain FA1090

34.903

100

0.364