Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6G67_RS01100 Genome accession   NZ_CP065666
Coordinates   209370..210092 (+) Length   240 a.a.
NCBI ID   WP_004691497.1    Uniprot ID   A0A380U8X3
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 204370..215092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS01085 (I6G67_01085) ponA 204965..207493 (-) 2529 WP_004691500.1 penicillin-binding protein PBP1a -
  I6G67_RS01090 (I6G67_01090) pilM 207659..208717 (+) 1059 WP_004691499.1 pilus assembly protein PilM Machinery gene
  I6G67_RS01095 (I6G67_01095) pilN 208717..209373 (+) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6G67_RS01100 (I6G67_01100) pilO 209370..210092 (+) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6G67_RS01105 (I6G67_01105) pilP 210092..210619 (+) 528 WP_004691496.1 pilus assembly protein PilP Machinery gene
  I6G67_RS01110 (I6G67_01110) pilQ 210639..212717 (+) 2079 WP_004691495.1 type IV pilus secretin PilQ Machinery gene
  I6G67_RS01115 (I6G67_01115) aroK 212755..213288 (+) 534 WP_004691494.1 shikimate kinase AroK -
  I6G67_RS01120 (I6G67_01120) aroB 213319..214404 (+) 1086 WP_004691493.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27004.43 Da        Isoelectric Point: 4.9937

>NTDB_id=512771 I6G67_RS01100 WP_004691497.1 209370..210092(+) (pilO) [Acinetobacter johnsonii strain FDAARGOS_910]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=512771 I6G67_RS01100 WP_004691497.1 209370..210092(+) (pilO) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACTAAGAAGAAAATGACGGTTGATAAGTTTTT
TCAACAGTTCAATACTTTGGATCCCAATAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTTTAGTGATTGGAGCTTTGGGTTATTTTGTCGTGATTAAGCCGAAACTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTCAATCAGCAGTTAGAACAGTTGCCGAAAGAAACTGAAATTCCGGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCTATTGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGCTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U8X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

67.755

100

0.692