Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | I6G86_RS00520 | Genome accession | NZ_CP065637 |
| Coordinates | 46053..46442 (-) | Length | 129 a.a. |
| NCBI ID | WP_042217592.1 | Uniprot ID | - |
| Organism | Lactococcus garvieae strain FDAARGOS_929 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3353..46442 | 46053..46442 | within | 0 |
Gene organization within MGE regions
Location: 3353..46442
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G86_RS00235 (I6G86_00235) | tmk | 3353..3982 (-) | 630 | WP_042217509.1 | dTMP kinase | - |
| I6G86_RS00240 (I6G86_00240) | yycF | 4193..4894 (+) | 702 | WP_003133894.1 | response regulator YycF | - |
| I6G86_RS00245 (I6G86_00245) | - | 4887..6305 (+) | 1419 | WP_042217511.1 | ATP-binding protein | - |
| I6G86_RS00250 (I6G86_00250) | - | 6302..7114 (+) | 813 | WP_003133892.1 | MBL fold metallo-hydrolase | - |
| I6G86_RS00255 (I6G86_00255) | - | 7482..8108 (-) | 627 | WP_143467445.1 | hypothetical protein | - |
| I6G86_RS00260 (I6G86_00260) | - | 8152..9156 (-) | 1005 | WP_042217515.1 | DUF4868 domain-containing protein | - |
| I6G86_RS00265 (I6G86_00265) | - | 9917..10972 (-) | 1056 | WP_042217517.1 | LysM peptidoglycan-binding domain-containing protein | - |
| I6G86_RS00270 (I6G86_00270) | - | 10992..11258 (-) | 267 | WP_042217518.1 | hypothetical protein | - |
| I6G86_RS00275 (I6G86_00275) | - | 11280..11819 (-) | 540 | WP_052370167.1 | hypothetical protein | - |
| I6G86_RS00280 (I6G86_00280) | - | 11833..12492 (-) | 660 | WP_042217520.1 | phage baseplate upper protein | - |
| I6G86_RS00285 (I6G86_00285) | - | 12503..13540 (-) | 1038 | WP_052370168.1 | SGNH/GDSL hydrolase family protein | - |
| I6G86_RS00290 (I6G86_00290) | - | 13537..15039 (-) | 1503 | WP_042217521.1 | phage tail protein | - |
| I6G86_RS00295 (I6G86_00295) | - | 15032..15868 (-) | 837 | WP_042217524.1 | phage tail domain-containing protein | - |
| I6G86_RS00300 (I6G86_00300) | - | 16241..16471 (-) | 231 | WP_042217525.1 | hypothetical protein | - |
| I6G86_RS00305 (I6G86_00305) | - | 16492..20364 (-) | 3873 | WP_052370169.1 | tape measure protein | - |
| I6G86_RS10720 | - | 20377..20505 (-) | 129 | WP_257874146.1 | hypothetical protein | - |
| I6G86_RS00310 (I6G86_00310) | - | 20571..20984 (-) | 414 | WP_042217527.1 | phage tail tube assembly chaperone | - |
| I6G86_RS00315 (I6G86_00315) | - | 21009..21665 (-) | 657 | WP_042217529.1 | phage tail protein | - |
| I6G86_RS00320 (I6G86_00320) | - | 21667..22050 (-) | 384 | WP_042217530.1 | DUF806 family protein | - |
| I6G86_RS00325 (I6G86_00325) | - | 22050..22460 (-) | 411 | WP_042217532.1 | phage tail protein | - |
| I6G86_RS00330 (I6G86_00330) | - | 22463..22810 (-) | 348 | WP_042217533.1 | phage head closure protein | - |
| I6G86_RS00335 (I6G86_00335) | - | 22803..23096 (-) | 294 | WP_197911532.1 | head-tail connector protein | - |
| I6G86_RS00340 (I6G86_00340) | - | 23149..24402 (-) | 1254 | WP_042217537.1 | phage major capsid protein | - |
| I6G86_RS00345 (I6G86_00345) | - | 24415..25119 (-) | 705 | WP_042217539.1 | head maturation protease, ClpP-related | - |
| I6G86_RS00350 (I6G86_00350) | - | 25140..26345 (-) | 1206 | WP_042217541.1 | phage portal protein | - |
| I6G86_RS00355 (I6G86_00355) | - | 26348..26557 (-) | 210 | WP_042217542.1 | DUF1056 family protein | - |
| I6G86_RS00360 (I6G86_00360) | - | 26526..28472 (-) | 1947 | WP_232254513.1 | terminase large subunit | - |
| I6G86_RS00365 (I6G86_00365) | - | 28432..28884 (-) | 453 | WP_042217547.1 | phage terminase small subunit P27 family | - |
| I6G86_RS00370 (I6G86_00370) | - | 29005..29505 (-) | 501 | WP_042217549.1 | HNH endonuclease | - |
| I6G86_RS00380 (I6G86_00380) | - | 30012..30449 (-) | 438 | WP_052370170.1 | DUF722 domain-containing protein | - |
| I6G86_RS00385 (I6G86_00385) | - | 30848..31378 (-) | 531 | WP_042217553.1 | hypothetical protein | - |
| I6G86_RS00390 (I6G86_00390) | - | 31483..31671 (-) | 189 | WP_042217555.1 | hypothetical protein | - |
| I6G86_RS00395 (I6G86_00395) | - | 31765..31974 (-) | 210 | WP_052370171.1 | hypothetical protein | - |
| I6G86_RS00400 (I6G86_00400) | - | 32001..32228 (-) | 228 | WP_042217557.1 | hypothetical protein | - |
| I6G86_RS00405 (I6G86_00405) | - | 32221..32376 (-) | 156 | WP_155269385.1 | hypothetical protein | - |
| I6G86_RS00410 (I6G86_00410) | - | 32369..32698 (-) | 330 | WP_052370172.1 | hypothetical protein | - |
| I6G86_RS00415 (I6G86_00415) | - | 32695..32994 (-) | 300 | WP_042217559.1 | hypothetical protein | - |
| I6G86_RS00420 (I6G86_00420) | - | 32991..33704 (-) | 714 | WP_052370173.1 | DUF1642 domain-containing protein | - |
| I6G86_RS00425 (I6G86_00425) | - | 33716..34609 (-) | 894 | WP_042217561.1 | DnaA ATPase domain-containing protein | - |
| I6G86_RS00430 (I6G86_00430) | - | 34609..34773 (-) | 165 | WP_169740171.1 | hypothetical protein | - |
| I6G86_RS00435 (I6G86_00435) | - | 34783..35520 (-) | 738 | WP_052370174.1 | helix-turn-helix domain-containing protein | - |
| I6G86_RS00440 (I6G86_00440) | - | 35517..35846 (-) | 330 | WP_143467447.1 | hypothetical protein | - |
| I6G86_RS00445 (I6G86_00445) | - | 36022..36225 (-) | 204 | WP_143467448.1 | ribbon-helix-helix protein, CopG family | - |
| I6G86_RS00450 (I6G86_00450) | - | 36601..37422 (-) | 822 | WP_042217568.1 | tyrosine-type recombinase/integrase | - |
| I6G86_RS00455 (I6G86_00455) | - | 37651..38322 (+) | 672 | WP_042217570.1 | DUF4145 domain-containing protein | - |
| I6G86_RS00460 (I6G86_00460) | - | 38445..38645 (-) | 201 | WP_042217572.1 | hypothetical protein | - |
| I6G86_RS00465 (I6G86_00465) | - | 38647..38934 (-) | 288 | WP_143467449.1 | hypothetical protein | - |
| I6G86_RS00470 (I6G86_00470) | - | 39079..39771 (-) | 693 | WP_042217578.1 | antA/AntB antirepressor family protein | - |
| I6G86_RS00475 (I6G86_00475) | - | 39774..40079 (-) | 306 | WP_042217580.1 | hypothetical protein | - |
| I6G86_RS00480 (I6G86_00480) | - | 40072..40311 (-) | 240 | WP_042217582.1 | hypothetical protein | - |
| I6G86_RS00485 (I6G86_00485) | - | 40729..41061 (+) | 333 | WP_042217583.1 | helix-turn-helix domain-containing protein | - |
| I6G86_RS00490 (I6G86_00490) | - | 41086..41520 (+) | 435 | WP_042217585.1 | hypothetical protein | - |
| I6G86_RS00495 (I6G86_00495) | - | 41536..41871 (+) | 336 | WP_042217587.1 | hypothetical protein | - |
| I6G86_RS00500 (I6G86_00500) | - | 42180..43325 (+) | 1146 | WP_042217588.1 | site-specific integrase | - |
| I6G86_RS00505 (I6G86_00505) | groL | 43413..45038 (-) | 1626 | WP_003133890.1 | chaperonin GroEL | - |
| I6G86_RS00510 (I6G86_00510) | groES | 45067..45348 (-) | 282 | WP_003133888.1 | co-chaperone GroES | - |
| I6G86_RS00515 (I6G86_00515) | - | 45465..45995 (-) | 531 | WP_042217590.1 | ClbS/DfsB family four-helix bundle protein | - |
| I6G86_RS00520 (I6G86_00520) | ssbB | 46053..46442 (-) | 390 | WP_042217592.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14703.88 Da Isoelectric Point: 9.3830
>NTDB_id=512378 I6G86_RS00520 WP_042217592.1 46053..46442(-) (ssbB) [Lactococcus garvieae strain FDAARGOS_929]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIESSALNLKEDELPF
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIESSALNLKEDELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=512378 I6G86_RS00520 WP_042217592.1 46053..46442(-) (ssbB) [Lactococcus garvieae strain FDAARGOS_929]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGATCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAGTAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCATTTGATCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAGTAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
56.589 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.538 |
100 |
0.519 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.769 |
100 |
0.512 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.769 |
100 |
0.512 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.769 |
100 |
0.512 |
| ssbA | Streptococcus mutans UA159 |
49.231 |
100 |
0.496 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
40.323 |
96.124 |
0.388 |