Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I4484_RS11885 Genome accession   NZ_CP065435
Coordinates   2526853..2528085 (+) Length   410 a.a.
NCBI ID   WP_197447506.1    Uniprot ID   -
Organism   Halomonas sp. SS10-MC5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2521853..2533085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I4484_RS11860 (I4484_11860) - 2522384..2522911 (-) 528 WP_197447502.1 HPP family protein -
  I4484_RS11865 (I4484_11865) - 2523168..2523686 (-) 519 WP_197447503.1 anti-virulence regulator CigR family protein -
  I4484_RS11870 (I4484_11870) - 2523758..2523982 (+) 225 WP_197447504.1 hypothetical protein -
  I4484_RS20980 - 2524185..2524571 (-) 387 WP_276574188.1 pilin -
  I4484_RS11880 (I4484_11880) pilB 2524957..2526738 (+) 1782 WP_197447505.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I4484_RS11885 (I4484_11885) pilC 2526853..2528085 (+) 1233 WP_197447506.1 type II secretion system F family protein Machinery gene
  I4484_RS11890 (I4484_11890) pilD 2528082..2528912 (+) 831 WP_234283473.1 A24 family peptidase Machinery gene
  I4484_RS11895 (I4484_11895) coaE 2528932..2529537 (+) 606 WP_197447507.1 dephospho-CoA kinase -
  I4484_RS11900 (I4484_11900) yacG 2529571..2529798 (+) 228 WP_197447508.1 DNA gyrase inhibitor YacG -
  I4484_RS11905 (I4484_11905) - 2529801..2530664 (+) 864 WP_197451020.1 DNA replication terminus site-binding protein -
  I4484_RS11910 (I4484_11910) - 2530692..2531429 (-) 738 WP_197447509.1 tellurite resistance TerB family protein -
  I4484_RS11915 (I4484_11915) - 2531458..2532057 (-) 600 WP_197447510.1 2-hydroxychromene-2-carboxylate isomerase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45116.86 Da        Isoelectric Point: 9.9184

>NTDB_id=509644 I4484_RS11885 WP_197447506.1 2526853..2528085(+) (pilC) [Halomonas sp. SS10-MC5]
MATKTARAPRKLKLYRWRWTGKGPGGRLVSGEIVAAEKFEVERELANQNIIVKNVRRKSGLTGGMGTIKPRDTMLFARQM
ATMIRAGVPVLQAFQVVAESIRKPAMSAVVQQMMNEVAAGSSFSQALRNHPEHFDSLFCNLVEAGESSGSLDRMLDRIAT
YKEKVESLKGRVKKALWYPIAVILVGIGVTALLLIKVVPQFESLFHGFGAELPAMTRMTIALSEFAQQYWLWGLGGLIAF
VYLMRQGIKRSPTFAYRVHAFLLKVPVLGDIFDKSAVARYSRTLATTYGAGVPMVEALDIAAGATGNLVYERATRQIRED
VSTGQQLHFAMRLTERFPALAVQMVGIGEESGALDAMLNRVADYYEEEVDNKVDALTSLLEPLIIVVLGILVGGLVVSMY
LPIFELGTVL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=509644 I4484_RS11885 WP_197447506.1 2526853..2528085(+) (pilC) [Halomonas sp. SS10-MC5]
ATGGCAACCAAAACGGCGAGAGCGCCAAGGAAGCTCAAGCTTTACCGCTGGCGCTGGACGGGCAAGGGTCCCGGCGGGCG
CCTGGTCAGCGGCGAGATAGTGGCCGCCGAGAAGTTCGAGGTGGAGCGCGAGCTGGCCAACCAGAACATCATCGTCAAGA
ACGTCCGCCGCAAGAGCGGGCTCACCGGCGGCATGGGCACCATCAAGCCCAGGGACACCATGCTCTTTGCCCGCCAGATG
GCCACGATGATCCGCGCCGGGGTGCCGGTACTGCAGGCCTTTCAGGTGGTCGCCGAGAGTATCCGCAAGCCGGCCATGAG
CGCGGTGGTGCAACAGATGATGAATGAGGTGGCGGCCGGCTCGAGCTTTTCCCAGGCGCTGCGCAACCACCCCGAGCACT
TCGACAGCCTGTTCTGCAACCTGGTGGAGGCCGGCGAGAGCTCCGGCTCACTGGACCGCATGCTCGACCGGATCGCCACC
TACAAGGAGAAGGTGGAATCGCTCAAGGGCCGGGTGAAGAAGGCGCTGTGGTATCCGATCGCGGTGATCCTGGTGGGGAT
CGGGGTCACCGCGCTGCTGCTGATCAAGGTGGTACCCCAGTTCGAGAGCCTGTTCCACGGCTTCGGCGCCGAACTGCCGG
CCATGACCCGCATGACCATCGCCCTTTCCGAGTTCGCCCAGCAGTACTGGCTGTGGGGGCTTGGCGGCCTGATCGCCTTC
GTCTACCTGATGCGCCAGGGCATCAAGCGCTCGCCGACCTTTGCCTACCGCGTGCATGCGTTCCTGCTCAAGGTGCCGGT
GCTAGGCGACATCTTCGACAAGTCGGCCGTGGCGCGCTACTCCCGCACCCTGGCCACCACCTACGGCGCCGGCGTGCCCA
TGGTGGAAGCGCTGGACATCGCCGCCGGGGCGACCGGCAACCTGGTCTACGAGCGTGCCACCCGGCAGATCCGCGAGGAC
GTCTCCACCGGCCAGCAGCTCCACTTCGCGATGCGCCTGACCGAGCGCTTCCCCGCGCTGGCGGTGCAGATGGTCGGTAT
CGGCGAGGAGTCCGGCGCGCTGGACGCCATGCTCAACCGGGTGGCCGACTACTACGAGGAGGAGGTCGACAACAAGGTCG
ACGCCCTCACCTCGCTGCTCGAGCCGCTGATCATCGTGGTACTGGGGATCCTGGTCGGCGGCCTGGTGGTCTCCATGTAC
CTGCCGATCTTCGAACTGGGCACGGTGCTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.97

98.537

0.522
  pilC Acinetobacter baumannii D1279779

50.882

96.829

0.493
  pilC Acinetobacter baylyi ADP1

50.882

96.829

0.493
  pilC Legionella pneumophila strain ERS1305867

50.378

96.829

0.488
  pilC Vibrio cholerae strain A1552

43.596

99.024

0.432
  pilC Vibrio campbellii strain DS40M4

43.176

98.293

0.424
  pilG Neisseria meningitidis 44/76-A

43.814

94.634

0.415
  pilG Neisseria gonorrhoeae MS11

43.75

93.659

0.41
  pilC Thermus thermophilus HB27

36.725

98.293

0.361