NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	I4484_RS11890	Genome accession	NZ_CP065435
Coordinates	2528082..2528912 (+)	Length	276 a.a.
NCBI ID	WP_234283473.1	Uniprot ID	-
Organism	Halomonas sp. SS10-MC5
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2523082..2533912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I4484_RS11865 (I4484_11865)	-	2523168..2523686 (-)	519	WP_197447503.1	anti-virulence regulator CigR family protein	-
I4484_RS11870 (I4484_11870)	-	2523758..2523982 (+)	225	WP_197447504.1	hypothetical protein	-
I4484_RS20980	-	2524185..2524571 (-)	387	WP_276574188.1	pilin	-
I4484_RS11880 (I4484_11880)	pilB	2524957..2526738 (+)	1782	WP_197447505.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I4484_RS11885 (I4484_11885)	pilC	2526853..2528085 (+)	1233	WP_197447506.1	type II secretion system F family protein	Machinery gene
I4484_RS11890 (I4484_11890)	pilD	2528082..2528912 (+)	831	WP_234283473.1	A24 family peptidase	Machinery gene
I4484_RS11895 (I4484_11895)	coaE	2528932..2529537 (+)	606	WP_197447507.1	dephospho-CoA kinase	-
I4484_RS11900 (I4484_11900)	yacG	2529571..2529798 (+)	228	WP_197447508.1	DNA gyrase inhibitor YacG	-
I4484_RS11905 (I4484_11905)	-	2529801..2530664 (+)	864	WP_197451020.1	DNA replication terminus site-binding protein	-
I4484_RS11910 (I4484_11910)	-	2530692..2531429 (-)	738	WP_197447509.1	tellurite resistance TerB family protein	-
I4484_RS11915 (I4484_11915)	-	2531458..2532057 (-)	600	WP_197447510.1	2-hydroxychromene-2-carboxylate isomerase	-

Sequence

Protein

Download Length: 276 a.a. Molecular weight: 30141.40 Da Isoelectric Point: 8.2163

                                >NTDB_id=509645 I4484_RS11890 WP_234283473.1 2528082..2528912(+) (pilD) [Halomonas sp. SS10-MC5]

MSVLWPLAAVLGLCLGSFLNVVIVRLPVMLMLGWRAEAREALELPEEETPRFNLLVPRSLCPRCETPIAWHDNLPLIGWF

KRRGRCASCQARISPQYPLVELAGAALALAVLTLYGATWQGLFVFGACLALLALAVIDLRTQLLPDMMTLPLLWAGLLYQ

LLFQPLMLTSAVIGAMAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPMVLILSAGVGAIVGILVQLAL

PRLRGAPMPFGPYLAASGWIALLVGEPLMATYISFI

Nucleotide

Download Length: 831 bp

                                >NTDB_id=509645 I4484_RS11890 WP_234283473.1 2528082..2528912(+) (pilD) [Halomonas sp. SS10-MC5]

GTGAGTGTGCTTTGGCCGCTAGCGGCCGTGCTGGGCCTGTGCCTGGGCAGCTTCCTCAACGTGGTGATCGTGCGCCTCCC

GGTCATGCTGATGCTGGGCTGGCGGGCCGAGGCCCGCGAAGCGCTGGAACTGCCCGAGGAGGAGACGCCCCGGTTCAACC

TGCTGGTGCCGCGCTCGCTCTGCCCGCGCTGTGAAACGCCCATCGCCTGGCACGACAACCTGCCGCTGATCGGCTGGTTC

AAGCGCCGCGGTCGCTGTGCCTCGTGCCAGGCCCGGATCAGCCCGCAATATCCGCTGGTGGAGCTGGCCGGCGCCGCCCT

GGCGCTGGCCGTGCTGACGCTCTACGGGGCCACCTGGCAGGGCCTGTTCGTGTTCGGCGCCTGCCTGGCGCTACTGGCCC

TGGCCGTGATCGATCTGCGCACCCAGCTGCTGCCGGACATGATGACCCTGCCGCTGCTGTGGGCCGGGCTGCTTTACCAG

TTGCTGTTCCAGCCGCTGATGCTCACCAGTGCGGTGATCGGGGCCATGGCAGGCTATCTTGCCCTGTGGAGCGTCTACTG

GCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACTTCAAGCTACTGGCGGCCCTGGGTGCCTGGCTCG

GCTGGCAGTACCTGCCGATGGTACTGATCCTTTCCGCCGGCGTGGGCGCCATCGTCGGCATCCTGGTGCAGCTCGCCCTG

CCCCGGCTGCGCGGCGCCCCGATGCCGTTCGGCCCCTACCTGGCCGCTTCGGGCTGGATCGCGCTGCTGGTGGGCGAACC

ATTGATGGCTACCTATATCAGCTTCATTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-112)

Type IV leader peptidase family (Peptidase_A24)

(128-234)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	52.727	99.638	0.525
pilD	Vibrio campbellii strain DS40M4	49.818	99.638	0.496
pilD	Acinetobacter baumannii D1279779	45.683	100	0.46
pilD	Acinetobacter nosocomialis M2	45.683	100	0.46
pilD	Neisseria gonorrhoeae MS11	47.17	96.014	0.453

Detailed information NTG0509645