Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I3K84_RS09060 Genome accession   NZ_CP065406
Coordinates   1897242..1898459 (+) Length   405 a.a.
NCBI ID   WP_088887536.1    Uniprot ID   -
Organism   Diaphorobacter sp. JS3051     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892242..1903459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K84_RS09040 (I3K84_09040) tnpB 1893064..1893396 (-) 333 WP_044397668.1 IS66 family insertion sequence element accessory protein TnpB -
  I3K84_RS09045 (I3K84_09045) - 1893393..1893794 (-) 402 WP_044397671.1 transposase -
  I3K84_RS09050 (I3K84_09050) - 1894037..1895128 (-) 1092 WP_196995943.1 site-specific integrase -
  I3K84_RS09055 (I3K84_09055) pilB 1895489..1897222 (+) 1734 WP_012655751.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I3K84_RS09060 (I3K84_09060) pilC 1897242..1898459 (+) 1218 WP_088887536.1 type II secretion system F family protein Machinery gene
  I3K84_RS09065 (I3K84_09065) pilD 1898459..1899340 (+) 882 WP_196995944.1 A24 family peptidase Machinery gene
  I3K84_RS09070 (I3K84_09070) coaE 1899372..1899965 (+) 594 WP_231403448.1 dephospho-CoA kinase -
  I3K84_RS09075 (I3K84_09075) zapD 1900056..1900811 (+) 756 WP_011804250.1 cell division protein ZapD -
  I3K84_RS09080 (I3K84_09080) - 1900818..1901048 (+) 231 WP_011804249.1 DNA gyrase inhibitor YacG -
  I3K84_RS09085 (I3K84_09085) - 1901117..1901563 (-) 447 WP_011804248.1 NUDIX domain-containing protein -
  I3K84_RS09090 (I3K84_09090) - 1901560..1902438 (-) 879 WP_011804247.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44409.42 Da        Isoelectric Point: 9.5091

>NTDB_id=509207 I3K84_RS09060 WP_088887536.1 1897242..1898459(+) (pilC) [Diaphorobacter sp. JS3051]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=509207 I3K84_RS09060 WP_088887536.1 1897242..1898459(+) (pilC) [Diaphorobacter sp. JS3051]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTACG
CGGCGAAGTACGCGCCGCGGGAGAGAATCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCAACGAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAAAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTTCCACTGCTTCAGGCATTTGATATCGTGGGCCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGCGATGTGGAGACAGGAACGTCCCTGAATGCCGCGTTCCGTAAATATCCGATGTACTTCGACAGCCTCTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATTCTGGAAGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTATCCGATCTCAGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACCTCGTTCGGAGCCGACCTGCCCGCCCCTACCCTGTTCG
TGATGGCCATCAGCGAATTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAAAAAATGCAGCGTTTCATGGACCGTTTCCTGCTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGTGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGGCGGTGCATCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAGATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTATTCCCCTCCATGGTGCTGCAGATGTGTGCGATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAAGCCGCCGATTTTTACGAAGCCGAAGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACGCTGATCGGTGGCATCGTGGTGTCGATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.062

100

0.551
  pilG Neisseria gonorrhoeae MS11

53.283

97.778

0.521
  pilG Neisseria meningitidis 44/76-A

53.03

97.778

0.519
  pilC Acinetobacter baylyi ADP1

50.503

98.272

0.496
  pilC Acinetobacter baumannii D1279779

49.622

98.025

0.486
  pilC Legionella pneumophila strain ERS1305867

49.497

98.272

0.486
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Vibrio cholerae strain A1552

40.152

97.778

0.393
  pilC Thermus thermophilus HB27

37.845

98.519

0.373