Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I3X05_RS13650 Genome accession   NZ_CP065217
Coordinates   2914189..2915415 (+) Length   408 a.a.
NCBI ID   WP_193185744.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 20-VB00237     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2909189..2920415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS13630 (I3X05_13975) ampD 2910273..2910836 (-) 564 WP_337970800.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  I3X05_RS13635 (I3X05_13980) nadC 2910929..2911816 (+) 888 WP_337970801.1 carboxylating nicotinate-nucleotide diphosphorylase -
  I3X05_RS13640 (I3X05_13985) - 2912032..2912472 (+) 441 WP_045571203.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  I3X05_RS13645 (I3X05_13990) pilB 2912480..2914168 (+) 1689 WP_337970802.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I3X05_RS13650 (I3X05_13995) pilC 2914189..2915415 (+) 1227 WP_193185744.1 type II secretion system F family protein Machinery gene
  I3X05_RS13655 (I3X05_14000) pilD 2915555..2916424 (+) 870 WP_193157540.1 A24 family peptidase Machinery gene
  I3X05_RS13660 (I3X05_14005) coaE 2916426..2917034 (+) 609 WP_193167015.1 dephospho-CoA kinase -
  I3X05_RS13665 (I3X05_14010) zapD 2917067..2917807 (+) 741 WP_045571208.1 cell division protein ZapD -
  I3X05_RS13670 (I3X05_14015) yacG 2917891..2918085 (+) 195 WP_045571209.1 DNA gyrase inhibitor YacG -
  I3X05_RS13675 (I3X05_14020) rplS 2918378..2918731 (-) 354 WP_045571210.1 50S ribosomal protein L19 -
  I3X05_RS13680 (I3X05_14025) trmD 2918774..2919523 (-) 750 WP_045571211.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I3X05_RS13685 (I3X05_14030) rimM 2919551..2920099 (-) 549 WP_045571212.1 ribosome maturation factor RimM -
  I3X05_RS13690 (I3X05_14035) rpsP 2920114..2920362 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45423.46 Da        Isoelectric Point: 10.4244

>NTDB_id=508203 I3X05_RS13650 WP_193185744.1 2914189..2915415(+) (pilC) [Vibrio navarrensis strain 20-VB00237]
MKVNAPTQIKNYRWKGINSSGKRVSGDVLAISEIEVRDKLHAQQIKIRKIKKSSVSILTRMSHRVKSRDITVFTRQISTM
LATGVPILQALKLVADNHRKAEMKSILTNVSKAIEAGTPMSKALRTASHHFDGLYTDLVATGEQSGNLALVFERLALYRE
KSEELRSKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFVGFGAELPWFTQKVLNLSDFVQAYSSWFFISLISAVYL
LRSISRKSDQVKLKFSRLSLRLPVLGGVFSKAAIAKFSRTLATSFSSGIPILTSLQTTSKTSGNLHYQYAIESVYRDTAA
GMPMYIAMRNSNAFPELVLQMVMIGEESGRLDDMLNRIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=508203 I3X05_RS13650 WP_193185744.1 2914189..2915415(+) (pilC) [Vibrio navarrensis strain 20-VB00237]
ATGAAGGTAAATGCGCCTACGCAGATTAAAAATTACCGCTGGAAAGGCATCAATAGCTCAGGCAAAAGAGTGTCAGGTGA
TGTGTTAGCCATCAGTGAAATCGAAGTGCGTGACAAACTGCATGCGCAGCAGATTAAGATCCGTAAGATAAAAAAATCCA
GCGTCTCAATATTGACCCGCATGAGTCACCGAGTAAAAAGCCGCGATATCACCGTCTTCACCCGCCAAATCTCGACCATG
CTCGCCACTGGCGTGCCGATCCTACAAGCGCTAAAACTGGTCGCCGATAACCACCGCAAAGCGGAGATGAAGTCCATTTT
AACCAACGTGAGTAAAGCGATTGAAGCGGGCACACCAATGTCCAAAGCCTTACGAACCGCCAGCCATCACTTTGACGGGC
TATACACGGATTTGGTCGCAACAGGCGAGCAGTCAGGCAACCTTGCACTGGTATTTGAACGCTTGGCACTCTATCGAGAA
AAAAGCGAAGAGCTGCGTTCCAAAGTGATCAAAGCATTGATTTATCCTTGCATGGTGGTGCTCGTCGCCTTGGGCGTCTC
TTATCTGATGCTAACGCAAGTAATTCCCGAGTTTCGCAAAATGTTTGTCGGCTTTGGTGCAGAGCTGCCTTGGTTTACGC
AGAAGGTGCTCAATTTATCGGACTTTGTCCAAGCTTATAGCAGTTGGTTTTTTATCTCCCTTATCAGCGCCGTTTATCTG
TTGCGCAGCATCAGTCGAAAGTCCGATCAGGTTAAACTGAAGTTTTCCCGTCTCAGTTTAAGGCTACCAGTACTCGGTGG
CGTGTTTTCCAAAGCGGCGATTGCCAAGTTCAGCCGCACATTAGCCACCAGTTTTAGCTCGGGTATTCCGATTCTAACCA
GCTTACAAACCACCAGCAAAACGTCAGGCAATCTGCACTATCAATACGCGATTGAAAGTGTTTATCGCGACACCGCCGCA
GGGATGCCGATGTACATTGCGATGCGCAACAGCAACGCCTTTCCCGAACTGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCGGGGCGTCTCGACGATATGCTCAATAGAATAGCGACCATCTATGAGTTCGAGGTGGACAACACCGTAGACAACCTCG
GTAAGATCCTTGAACCGCTGATCATCGTTTTTCTGGGCGTGGTGGTCGGCGGTTTGGTCGCGGCCATGTACCTACCAATA
TTTAACTTAATGAGTGTTATGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

75.49

100

0.755
  pilC Vibrio cholerae strain A1552

74.265

100

0.743
  pilC Acinetobacter baumannii D1279779

39.512

100

0.397
  pilG Neisseria gonorrhoeae MS11

39.801

98.529

0.392
  pilC Acinetobacter baylyi ADP1

39.85

97.794

0.39
  pilG Neisseria meningitidis 44/76-A

39.552

98.529

0.39
  pilC Legionella pneumophila strain ERS1305867

39.259

99.265

0.39
  pilC Pseudomonas stutzeri DSM 10701

38.821

99.755

0.387