Detailed information NTG0508204

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I3X05_RS13655
• Genome accession: NZ_CP065217
• Coordinates: 2915555..2916424 (+)
• Length: 289 a.a.
• NCBI ID: WP_193157540.1
• Uniprot ID: A0AAJ4LTT5
• Organism: Vibrio navarrensis strain 20-VB00237
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2910555..2921424

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3X05_RS13635 (I3X05_13980)	nadC	2910929..2911816 (+)	888	WP_337970801.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I3X05_RS13640 (I3X05_13985)	-	2912032..2912472 (+)	441	WP_045571203.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
I3X05_RS13645 (I3X05_13990)	pilB	2912480..2914168 (+)	1689	WP_337970802.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I3X05_RS13650 (I3X05_13995)	pilC	2914189..2915415 (+)	1227	WP_193185744.1	type II secretion system F family protein	Machinery gene
I3X05_RS13655 (I3X05_14000)	pilD	2915555..2916424 (+)	870	WP_193157540.1	A24 family peptidase	Machinery gene
I3X05_RS13660 (I3X05_14005)	coaE	2916426..2917034 (+)	609	WP_193167015.1	dephospho-CoA kinase	-
I3X05_RS13665 (I3X05_14010)	zapD	2917067..2917807 (+)	741	WP_045571208.1	cell division protein ZapD	-
I3X05_RS13670 (I3X05_14015)	yacG	2917891..2918085 (+)	195	WP_045571209.1	DNA gyrase inhibitor YacG	-
I3X05_RS13675 (I3X05_14020)	rplS	2918378..2918731 (-)	354	WP_045571210.1	50S ribosomal protein L19	-
I3X05_RS13680 (I3X05_14025)	trmD	2918774..2919523 (-)	750	WP_045571211.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
I3X05_RS13685 (I3X05_14030)	rimM	2919551..2920099 (-)	549	WP_045571212.1	ribosome maturation factor RimM	-
I3X05_RS13690 (I3X05_14035)	rpsP	2920114..2920362 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32390.59 Da
• Isoelectric Point: 7.8837

>NTDB_id=508204 I3X05_RS13655 WP_193157540.1 2915555..2916424(+) (pilD) [Vibrio navarrensis strain 20-VB00237]
MDALHYYPWLYVGLAALFGLIVGSFLNVVIYRLPKMMELEWQRECAEAFPQYAIPAPKETLSLSTPRSTCPTCHTPIRIR
DNIPLLSWFWLKGRCHQCQSKISGRYPAVELLSATLCALVAWKFGYSLYSLALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWSGIALALLEISPVSLQNSVIGAMAGYLCLWSVYHLFRLMTGKEGMGYGDFKLLAALGAWLGWQSLLMIILLSSVVGL
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVALMWGESLMSWYFSVMMGA

Nucleotide

• Length: 870 bp

>NTDB_id=508204 I3X05_RS13655 WP_193157540.1 2915555..2916424(+) (pilD) [Vibrio navarrensis strain 20-VB00237]
ATGGATGCATTGCACTACTATCCTTGGCTGTATGTTGGCCTAGCGGCGTTATTTGGCTTGATTGTCGGTAGCTTTCTCAA
CGTGGTTATTTATCGCTTGCCGAAAATGATGGAACTGGAGTGGCAACGGGAATGTGCCGAGGCCTTTCCTCAATACGCCA
TCCCCGCGCCGAAGGAAACGCTCTCCCTCAGCACGCCGCGTTCCACTTGCCCGACGTGCCATACTCCAATTCGTATCCGC
GATAACATTCCGCTGCTGAGTTGGTTTTGGCTCAAAGGGCGCTGTCATCAGTGTCAAAGTAAGATCAGTGGCCGCTATCC
TGCGGTTGAGCTGCTCAGTGCAACCCTATGCGCCTTGGTGGCGTGGAAATTTGGCTACAGCCTTTACTCGCTGGCACTGC
TGTTTTTCACCTTTACCTTGATCGCTGCGACCTTTATCGATCTCGATACCATGCTATTGCCAGATCAACTGACCCTGCCT
TTAACTTGGTCCGGTATTGCCCTTGCGCTGCTGGAAATCAGCCCTGTCTCTTTGCAAAATTCGGTGATTGGCGCCATGGC
AGGCTATCTCTGCCTTTGGTCTGTCTATCACCTTTTCCGTCTGATGACAGGGAAAGAAGGCATGGGGTATGGCGATTTTA
AGTTATTGGCCGCGCTCGGCGCTTGGCTAGGCTGGCAATCACTTCTGATGATCATTTTGCTCTCTTCGGTGGTAGGGCTA
ATCTTTGGCCTGATCCAACTTCGCTTACAAAAACAGGGCATCGAAAAAGCGTTTCCTTTTGGCCCCTATCTCGCCATCGC
CGGCTGGGTCGCATTAATGTGGGGCGAATCGTTAATGAGTTGGTATTTCAGCGTAATGATGGGGGCATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	67.708	99.654	0.675
pilD	Acinetobacter nosocomialis M2	51.273	95.156	0.488
pilD	Acinetobacter baumannii D1279779	50.545	95.156	0.481
pilD	Neisseria gonorrhoeae MS11	47.191	92.388	0.436