Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SMULJ23_RS01570 | Genome accession | NC_017768 |
| Coordinates | 342414..342908 (+) | Length | 164 a.a. |
| NCBI ID | WP_002261867.1 | Uniprot ID | A0AAX1K2T1 |
| Organism | Streptococcus mutans LJ23 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 343444..344646 | 342414..342908 | flank | 536 |
Gene organization within MGE regions
Location: 342414..344646
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMULJ23_RS01570 (SMULJ23_0299) | ssbA | 342414..342908 (+) | 495 | WP_002261867.1 | single-stranded DNA-binding protein | Machinery gene |
| SMULJ23_RS01575 (SMULJ23_0300) | rpsR | 342938..343177 (+) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| SMULJ23_RS01580 (SMULJ23_0301) | - | 343444..344646 (-) | 1203 | WP_014677767.1 | IS110 family transposase | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18331.97 Da Isoelectric Point: 4.7187
>NTDB_id=50744 SMULJ23_RS01570 WP_002261867.1 342414..342908(+) (ssbA) [Streptococcus mutans LJ23]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=50744 SMULJ23_RS01570 WP_002261867.1 342414..342908(+) (ssbA) [Streptococcus mutans LJ23]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.062 |
100 |
0.616 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.059 |
100 |
0.591 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.261 |
72.561 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.62 |
100 |
0.372 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
52.632 |
69.512 |
0.366 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.42 |
72.561 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.42 |
72.561 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.42 |
72.561 |
0.366 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.42 |
72.561 |
0.366 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.42 |
72.561 |
0.366 |