Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BTD91_RS09080 Genome accession   NZ_CP065150
Coordinates   2012473..2013702 (-) Length   409 a.a.
NCBI ID   WP_077680843.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2007473..2018702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS09040 (BTD91_09040) rpsP 2007624..2007872 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  BTD91_RS09045 (BTD91_09045) rimM 2007897..2008451 (+) 555 WP_017056602.1 ribosome maturation factor RimM -
  BTD91_RS09050 (BTD91_09050) trmD 2008478..2009218 (+) 741 WP_077680847.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BTD91_RS09055 (BTD91_09055) rplS 2009278..2009631 (+) 354 WP_017056604.1 50S ribosomal protein L19 -
  BTD91_RS09060 (BTD91_09060) yacG 2009874..2010071 (-) 198 WP_077680846.1 DNA gyrase inhibitor YacG -
  BTD91_RS09065 (BTD91_09065) zapD 2010152..2010892 (-) 741 WP_029627015.1 cell division protein ZapD -
  BTD91_RS09070 (BTD91_09070) coaE 2010919..2011533 (-) 615 WP_077680845.1 dephospho-CoA kinase -
  BTD91_RS09075 (BTD91_09075) pilD 2011536..2012405 (-) 870 WP_077680844.1 prepilin peptidase Machinery gene
  BTD91_RS09080 (BTD91_09080) pilC 2012473..2013702 (-) 1230 WP_077680843.1 type II secretion system F family protein Machinery gene
  BTD91_RS09085 (BTD91_09085) pilB 2013718..2015403 (-) 1686 WP_077680842.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BTD91_RS09090 (BTD91_09090) - 2015407..2015859 (-) 453 WP_077680841.1 pilin -
  BTD91_RS09095 (BTD91_09095) nadC 2016116..2017006 (-) 891 WP_077680840.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BTD91_RS09100 (BTD91_09100) ampD 2017090..2017691 (+) 602 Protein_1690 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45360.49 Da        Isoelectric Point: 10.1674

>NTDB_id=507438 BTD91_RS09080 WP_077680843.1 2012473..2013702(-) (pilC) [Vibrio kanaloae strain R17]
MSIQPKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLNEQHIQIKKIKKKNISAITRLTHRVKAKDITILTRQLAT
MLTTGVPIVQAIKLVSDNHRKAEMKSILSHICKGIEAGTPISRAMRTASSHFDELYTDLVATGELSGNLAQVFDRLATYR
EKSEQLRSKVIKALIYPAMVVLVALSVSYLMLTVVIPEFESMFAGFGADLPWFTQQVLQLSHWMQAYSLYAVIAVIVVMV
SFKLLRKRSYSLRLTTSRLSLKFPILGTVLSKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEVAIGEVHRETA
AGMPMYIAMRNTDVFPEMVLQMVMIGEESGNLDDMLNKVAAIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=507438 BTD91_RS09080 WP_077680843.1 2012473..2013702(-) (pilC) [Vibrio kanaloae strain R17]
ATGAGTATTCAGCCCAAACAGTCACAATTAAAAAGCTACCATTGGAAAGGTATAAATAGCTCAGGTAAGAAAGTGTCTGG
CCAAACTTTAGCGTTAACCGAATTGGAAGTGCGAGAGAAACTCAATGAACAGCATATCCAGATAAAAAAAATCAAAAAGA
AAAATATCTCGGCCATTACACGCTTAACGCATCGCGTCAAAGCAAAAGACATCACAATTTTGACTCGCCAGCTTGCCACT
ATGCTAACCACCGGAGTACCAATCGTGCAGGCGATTAAATTGGTATCAGATAACCACCGCAAAGCTGAAATGAAATCTAT
TCTGTCGCATATCTGTAAAGGCATCGAAGCCGGCACTCCTATTTCAAGAGCGATGCGTACGGCCAGTAGCCACTTTGATG
AGCTCTATACCGACTTAGTCGCAACTGGCGAACTTTCAGGTAACCTTGCGCAAGTCTTTGATCGCTTGGCGACATATCGT
GAAAAGAGTGAACAACTCCGCTCAAAAGTCATCAAAGCACTCATTTACCCTGCTATGGTGGTGTTAGTTGCCTTATCGGT
TTCTTACCTAATGCTAACCGTGGTTATTCCAGAATTTGAATCCATGTTTGCAGGTTTTGGCGCTGATCTCCCTTGGTTTA
CCCAGCAAGTTTTGCAGTTATCACATTGGATGCAAGCTTATAGTCTTTACGCTGTGATTGCCGTTATTGTTGTAATGGTT
AGTTTTAAATTACTGCGTAAGCGCTCCTACTCACTCAGATTAACCACCAGCCGACTCAGTTTAAAATTTCCCATACTCGG
TACGGTTCTATCTAAAGCTTCTATCGCCAAATTCAGTCGAACTCTTTCTACTAGTTTCAGTTCAGGTATCCCGATCCTGA
CTAGCCTTAAAACCACAGCAAAAACCGCGGGTAACCTTCATTATGAGGTTGCGATTGGAGAAGTTCACCGTGAAACAGCG
GCAGGTATGCCAATGTATATCGCGATGCGTAATACAGACGTGTTCCCTGAAATGGTGCTACAGATGGTGATGATTGGTGA
GGAATCGGGAAATTTAGACGACATGCTCAACAAGGTTGCGGCTATTTATGAATTTGAAGTCGACAATACCGTCGATAACT
TAGGTAAGATTTTGGAACCGCTGATCATTGTCTTTCTGGGCACCGTTGTAGGAGGACTTGTTGTCGCAATGTACTTACCA
ATCTTTAATCTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.5

97.8

0.787
  pilC Vibrio campbellii strain DS40M4

75.062

98.044

0.736
  pilC Legionella pneumophila strain ERS1305867

43.358

97.555

0.423
  pilC Acinetobacter baumannii D1279779

42.327

98.778

0.418
  pilC Acinetobacter baylyi ADP1

42.211

97.311

0.411
  pilG Neisseria gonorrhoeae MS11

40.852

97.555

0.399
  pilG Neisseria meningitidis 44/76-A

40.602

97.555

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.152

96.822

0.389